New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	346068 =	NA (NA)	87 (1.420)	76/588	0.0	98.9%	intergenic (‑51/‑107)	LY180_01675/LY180_01680	CadC family transcriptional regulator/hypothetical protein
	?	CP006584	= 363812	1 (0.020)					intergenic (‑39/‑249)	LY180_01770/LY180_01775	outer membrane phosphoporin protein E/gamma‑glutamyl kinase

CATCATCGATAGCAACGCGCAACGCATGGATCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGA‑ACAAAACATAACATCAAACGAATCG  >  CP006584/345777‑346358                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                     catcatcGATAGCAACGCGCAACGCATGGATCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGaa                                                                                                                                                                                                                                                                                               >  1:349830/1‑299 (MQ=255)  atcatcGATAGCAACGCGCAACGCATGGATCGCCGTCGGCAGGCTGTTTCCGCCGACACTGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGATAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCTTTTCGCAATGTCTTAAGGCATTAAGCGACTGGTCCATTCGCCAGTTGTTGATAATAATACTTATAGTTGAGTTTCCCTTAACCAGGGAAAAATCTTTCCTGATAGTACTTTTCAcctgtgaaa                                                                                                                                                                                                                                                                                              >  2:37700/1‑291 (MQ=255)  atactacaatacgacgcgtaacgcATAGATCGCCCACGCCAAGCTGTTCCCGCCGACAATGTGGTTCTTCCATACTTCGGCACATAAATAAGAGCGCGATAAAACCACATCGGCATTTTTTGCGAATTTTTCCAGCAAAATAAAATGGGATTCGCCGAGACGACGTGTTTCACCCGGTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTGGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAAt                                                                                                                                                                                                                                                                                              <  2:521513/286‑1 (MQ=255)                  cgcaacgcATGGATCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACTACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCATTTGTTGATAATAATACTAATAGTTTATTTTACCTTAGCAAGGGATAACTGTTTCCTTATAGTGATTTGCACTTATAAATCCCCTCTTGTTTTTgg                                                                                                                                                                                                                                                                              >  2:508143/1‑299 (MQ=255)                       cgcATGGATCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTaaaa                                                                                                                                                                                                                                                                         >  1:333789/1‑299 (MQ=255)                         cATGGAGCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAAt                                                                                                                                                                                                                                                                       <  1:24977/299‑1 (MQ=255)                          aTGGATCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGTCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTAACTTAGCAAGGGATAACTGTTCCATGATAGTGCTTTGCACTGATGAATACCCTAATTATTTTGGTAAAAATc                                                                                                                                                                                                                                                                      >  2:209170/1‑299 (MQ=255)                           tGGATCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGAGAATAATACTCATAGTTGAGTTTACCTTATCAAGGGATAAATGTTTCCTAATAGTGCTTTGAACTGATGAATCCCCTAATGATTTTGGTAAAAACCa                                                                                                                                                                                                                                                                     >  2:484792/1‑299 (MQ=255)                                cGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCAttaag                                                                                                                                                                                                                                                                >  2:311224/1‑299 (MQ=255)                                     ttggCATGCTGTTTCCGCCGAAAATGAGGGTCTTCCATACTTCGGTACAATAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAAGGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCAttaagttaag                                                                                                                                                                                                                                                           <  2:259763/297‑1 (MQ=255)                                             cTGTTTCCGCCGACGATGCGGTTCTTCCATACTTCGGCGCATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCACAATAAAATGGTATTCGCCGAGACGACGTTTTTCACCAGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATac                                                                                                                                                                                                                                                   <  1:545172/299‑1 (MQ=255)                                                    ctcgcaCAATGCGGATCGTCCATACTTCGGCACATAAATAAGAGCGCGATAAAACCACATCGGCATTGTTTGCTAATGGTTCCAGCAAAATAAAATGGTATTCGCCTAGACGACGTGTTTCACACGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCtt                                                                                                                                                                                                                                            <  2:298137/294‑1 (MQ=255)                                                                    cttcTATACTTCGATACTGAATAAAGGTGGAGACAAAACCACATAGGGATTGTTTGCTAATTTTTCCAGTAAAATAAAATTGGATTCGCCGAGATGACGTGTTTCACCCTTTTCGCAATTGATTAAGGCATTAAGCGACGGGTCCATCCGCCATGTGTTGATAATAATACTCATAGTTTAGTTTACCTTAGCAAGGGGTAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTTTCATAGGATCAAATg                                                                                                                                                                                                                            <  2:618018/299‑1 (MQ=37)                                                                    cttcCATACTTCGGCAAATAAATAAAAACCCGATAAAACCAAATCGGCATTTTTTGCTAATGGTTCCAGCAAAATAAAATGGTATTCGCCGAGACGGCGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATg                                                                                                                                                                                                                            <  2:540674/299‑1 (MQ=255)                                                                         aTACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCACGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATAAATCCCCTAATGATTTTGGTTAAAATCATTAAGTTAAGGTGGATAAAAATCTTGTCATATGACCAAATGGTTTc                                                                                                                                                                                                                       >  2:207120/1‑299 (MQ=255)                                                                          tACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTcg                                                                                                                                                                                                                      >  1:593852/1‑299 (MQ=255)                                                                                 gCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGaaaaa                                                                                                                                                                                                               >  1:345790/1‑299 (MQ=255)                                                                                         ataaatatgcaaTAAAACCACATCGGCATTTTTTGCTAATTTTTCCCGCAAAATAAAATGGTATTCGCCGAGACGACTTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTGTACCTTAGCAAGGGATAAATTTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAGAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCaataat                                                                                                                                                                                                       <  2:284265/288‑1 (MQ=255)                                                                                               tCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGaca                                                                                                                                                                                                 <  1:311224/299‑1 (MQ=255)                                                                                                actgATAAAACCACTTCGTCTTTTTTTGTTAATGTTTCCAGCAAAATAAAATGGTATTATCCGAGACTACGTGTTTCACCCGTTTGTCAAGGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGAATTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGacaa                                                                                                                                                                                                <  2:87843/296‑1 (MQ=37)                                                                                                      aaaaCCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGAt                                                                                                                                                                                          <  1:332154/299‑1 (MQ=255)                                                                                                       aaaCCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGAtg                                                                                                                                                                                         >  2:209136/1‑299 (MQ=255)                                                                                                                   cagtttttGCTTAGGTTTCACTGAAAATAACATTGTATTCGCCGGGACGACGTATTTTACCGGTTTTGCAATGTATTAAGGTATTAAGCGCAGGGTCCACACGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGat                                                                                                                                                                             <  2:640595/296‑1 (MQ=21)                                                                                                                                     ccAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATCATCAGACAACACGAAGTGAGAACCCGAAATTTTACCCGACACT‑Ctt                                                                                                                                                          >  2:118723/1‑299 (MQ=255)                                                                                                                                             ataaaatGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAAtt                                                                                                                                                  <  1:540575/299‑1 (MQ=255)                                                                                                                                                aaatGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCTATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTg                                                                                                                                               >  1:156428/1‑299 (MQ=255)                                                                                                                                                     ttATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGAtgt                                                                                                                                                                                        <  2:339513/253‑1 (MQ=255)                                                                                                                                                     gTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGAtgt                                                                                                                                                                                        >  1:339513/1‑254 (MQ=255)                                                                                                                                                          cGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTa                                                                                                                                     >  1:195456/1‑299 (MQ=255)                                                                                                                                                              gagaCGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACt                                                                                                                                 >  2:540776/1‑299 (MQ=255)                                                                                                                                                               agaCGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATTATTTTGGTAACAATCATTACGTTAAGGTGAATACCCATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACAC‑ACCCTGCTTTACAACTTCTCCCCCAAGTTACACtt                                                                                                                                >  2:632872/1‑299 (MQ=25)                                                                                                                                                                        gtTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACt                                                                                                                       <  2:593852/299‑1 (MQ=255)                                                                                                                                                                                       aaaTGTATTAAGGCATATAGCGACTGTTCCATCCGGCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGAAAGGGATAAATGTTTCCTGATAGTGTTTTGCACTGATGTATCCACTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACAAATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGtt                                                                                                        <  2:195456/298‑1 (MQ=18)                                                                                                                                                                                         aTGTATGAAGGTATGAAGCGACGGGTCCATCCGGCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTgg                                                                                                      <  2:472195/299‑1 (MQ=255)                                                                                                                                                                                             ataaaGGAATTAAGCGCCGGGTCCATCCGCCGGTTTTTGATAATAATACTCATAGTTGAGTTTACCTTGGCAATGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTg                                                                                                  <  2:129897/296‑1 (MQ=255)                                                                                                                                                                                              ttAATGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAGTGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGc                                                                                                 <  2:476332/299‑1 (MQ=255)                                                                                                                                                                                                 aGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCAc                                                                                              >  1:455694/1‑299 (MQ=255)                                                                                                                                                                                                                ggTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGt                                                                               >  1:635831/1‑299 (MQ=255)                                                                                                                                                                                                                ggTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGt                                                                               <  1:571909/299‑1 (MQ=255)                                                                                                                                                                                                                 gTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTa                                                                              <  1:508143/299‑1 (MQ=255)                                                                                                                                                                                                                   ccATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGCTAGTGCTGTGCACTGATGAATCACCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGAAACCAAGATGTGCGACATCGATATTTGACACGACTCT‑CTTTACCAATTCTGCCCCGAATACCACTTAAAACGACTCAACACATAAACTTTGGCTTGCCACAAATTAAATAAATGTaaa                                                                            >  2:360509/1‑299 (MQ=17)                                                                                                                                                                                                                     aTCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTTCCCCGAATTACACTTAAAACGACACAACAGCTTACCGTTGCCTTCCCACGAATTACTGGCCTGTaaaat                                                                          >  2:97808/1‑298 (MQ=255)                                                                                                                                                                                                                          ccAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCa                                                                     >  1:634443/1‑299 (MQ=255)                                                                                                                                                                                                                           cAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCAc                                                                    <  1:45163/299‑1 (MQ=255)                                                                                                                                                                                                                            cgttgttGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAACAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCAACGCATTACTAGACTGTAAACCTCACAct                                                                   >  2:418407/2‑299 (MQ=255)                                                                                                                                                                                                                               tgttgATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCtt                                                                <  1:20996/299‑1 (MQ=255)                                                                                                                                                                                                                                gttgATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTg                                                                                    >  2:389868/1‑278 (MQ=255)                                                                                                                                                                                                                                gttgATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTg                                                                                    <  1:389868/278‑1 (MQ=255)                                                                                                                                                                                                                                gttgATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTa                                                               >  1:610291/1‑299 (MQ=255)                                                                                                                                                                                                                                    ataataataCTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGAGAACTCGATATTTTAAACGACTCT‑CTTTAACCATTCTGCCCCGAATTACACTTAAAACGCCACAACAGCTAAACGTTGACTTGACACGCATTACTAGACTGTAAACCTCACCCTATTACCGa                                                           >  2:204295/1‑299 (MQ=17)                                                                                                                                                                                                                                            aCTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGcc                                                   >  1:204183/1‑299 (MQ=255)                                                                                                                                                                                                                                                 tatttGATTTTACCTGATCAAGTGATAAATGTTTACTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTTTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGCCTACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAAc                                              <  2:349830/296‑1 (MQ=255)                                                                                                                                                                                                                                                     tGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACCCATTACTTGACTGTAAAACTCCCACTCTTACCGAACTTGGCCGTAAccctc                                          >  2:59394/1‑296 (MQ=255)                                                                                                                                                                                                                                                               ttAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTac                                                                                                                                    >  1:391501/1‑199 (MQ=255)                                                                                                                                                                                                                                                               ttAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTac                                                                                                                                    <  2:391501/199‑1 (MQ=255)                                                                                                                                                                                                                                                                   cAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCgaga                            <  1:198116/299‑1 (MQ=40)                                                                                                                                                                                                                                                                             aTGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATATACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTATAACTCCCACTCTTACCTAACTTGGCCGTAACCTTCCAACCAAAGTTAAA‑AAAAaaaata                 >  1:586549/1‑299 (MQ=11)                                                                                                                                                                                                                                                                               gTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGA‑ACAAaacataac               <  1:540776/299‑1 (MQ=35)                                                                                                                                                                                                                                                                                 ttCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAACTGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGCTATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGCATTACACTTCAAAAGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTAACTCTTCCCGAACTTGGACGTAACCTACAAACCAAAGCCAGA‑ACAAcacataacca             >  2:448944/1‑297 (MQ=11)                                                                                                                                                                                                                                                                                      gATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGA‑ACAAAACATAACATCAAAc        <  1:329672/299‑1 (MQ=33)                                                                                                                                                                                                                                                                                         ggTGCTTTGCTCTGATGAATCACCTAATGAGTTTGGTAAAAATGCATAAGTGACAGTGGATACAGATCTTGTCAGATGATCAAATTGTTTCGCGAAAATTCACTAATCAGACAACAAGCTGTGCGAACTCGAAATTTTACACGACTAG‑CTTTACCAATTCTGCCCCGAATTACACTTACAACGACGAAACATCTGAACGTTGTCTTGCCACGCATTAGTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGA‑ACAAAACATAACATCAAACGaa     <  2:531183/298‑1 (MQ=11)                                                                                                                                                                                                                                                                                         aGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTAGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTCCGAACTCGATATTTTACACGACTCT‑CTTTCCCAATTCGGCCCCGAATTACACTGAAAACGACTCAACCGCTTACCGTTGCCTTGCCACGCATCACTTCACTGTAAAACTCTAACTACTAACGAACTTGGCCGTACACTGACAACCAAAGCCAGACAAAAAACA‑AAAATCaaccaac     >  2:366140/1‑294 (MQ=11)                                                                                                                                                                                                                                                                                            gCTTTGCACTGATGAATCCCCTAATGATGTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCACTTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCAAACTTGGCAGTAACATGCCAACCAACCCCAGA‑ACAAACCCTAACATCAACCGAATca  >  2:497230/1‑298 (MQ=11)                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                     CATCATCGATAGCAACGCGCAACGCATGGATCGCCGTCGGCAGGCTGTTTCCGCCGACAATGCGGTTCTTCCATACTTCGGCACATAAATAAGATCGCGATAAAACCACATCGGCATTTTTTGCTAATGTTTCCAGCAAAATAAAATGGTATTCGCCGAGACGACGTGTTTCACCCGTTTCGCAATGTATTAAGGCATTAAGCGACGGGTCCATCCGCCAGTTGTTGATAATAATACTCATAGTTGAGTTTACCTTAGCAAGGGATAAATGTTTCCTGATAGTGCTTTGCACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCT‑CTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAAGCGAGA‑ACAAAACATAACATCAAACGAATCG  >  CP006584/345777‑346358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.