mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 566,277 | 0 | C | T | 46.8% | 10.0 / 62.3 | 47 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,173 | 0 | C | G | 43.3% | 31.9 / 101.8 | 60 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,323 | 0 | C | T | 42.2% | 21.2 / 51.9 | 45 | pseudogene (54/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,326 | 0 | T | C | 42.2% | 9.9 / 57.4 | 45 | pseudogene (51/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,205 | 0 | T | C | 41.5% | 20.1 / 66.7 | 53 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,332 | 0 | T | G | 39.1% | 27.5 / 72.3 | 46 | pseudogene (45/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.9% | 34.2 / 35.9 | 36 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 566,245 | 0 | G | A | 36.4% | 29.0 / 29.1 | 33 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,356 | 0 | T | C | 35.6% | 32.7 / 46.6 | 45 | pseudogene (21/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 3,482,480 | 0 | C | . | 26.7% | 36.7 / 10.1 | 15 | coding (1192/1914 nt) | yheS | ABC‑F family protein predicted regulatory ATPase |
| * | NC_000913 | 1,002,217 | 1 | . | G | 25.0% | 44.3 / 23.2 | 24 | coding (411/1071 nt) | elfG | putative fimbrial‑like adhesin protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3377925 | 32 (0.880) | 3 (0.080) | 3/222 | 3.5 | 8.4% | coding (283/393 nt) | rpsI | 30S ribosomal subunit protein S9 |
| ? | NC_000913 | 3377929 = | 34 (0.950) | coding (279/393 nt) | rpsI | 30S ribosomal subunit protein S9 | |||||