| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 3,304,813 | (C)7→10 | coding (1005/1245 nt) | mtr ← | tryptophan transporter of high affinity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3304806 | 0 (0.000) | 18 (0.730) +CCC |
12/220 | 0.7 | 100% | coding (1012/1245 nt) | mtr | tryptophan transporter of high affinity |
| ? | NC_000913 | 3304807 = | 0 (0.000) | coding (1011/1245 nt) | mtr | tryptophan transporter of high affinity | |||||
TTCGGGCTGCCAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAACCCAGCGTTAC > NC_000913/3304685‑3304917 | ttCGGGCTGCCAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactgg < 2:365883‑M1/139‑18 (MQ=255)ttCGGGCTGCCAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactgg < 2:112807‑M1/139‑18 (MQ=255) cAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaag < 2:297621‑M1/139‑28 (MQ=255) tACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGccccccccccacaactggcggggcaaaggtcagcaa > 2:30988‑M1/1‑103 (MQ=255) tACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaat > 2:21411‑M1/1‑103 (MQ=255) ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagcc > 1:162325‑M1/1‑79 (MQ=255) ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagcc > 2:4958‑M1/1‑79 (MQ=255) ccGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagcc > 2:183692‑M1/1‑79 (MQ=255) aaTTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgt < 1:4958‑M1/139‑68 (MQ=255) cAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaa < 2:291061‑M1/139‑78 (MQ=255) aTGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaacag < 1:183692‑M1/139‑81 (MQ=255) aTGGTAGCCGCTAAACCAGCACAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccataactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccacacag < 1:290943‑M1/139‑81 (MQ=255) tGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGccccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaacag < 2:120096‑M1/139‑82 (MQ=255) aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaacagatctgcca > 1:354152‑M1/1‑45 (MQ=255) aCCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaacagatctgcca < 2:354152‑M1/133‑89 (MQ=255) aCCAGCATAACCAAAGGCGTAACGGAAACCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaacagatctgccagatagt < 1:197086‑M1/139‑95 (MQ=255) ggCGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaacagatctgccagatagtcaaacaaacccagcg > 2:90743‑M1/1‑30 (MQ=255) cGTACAGGAATCCGTTCGGGAACAACAGcccccccccacaactggcggggcaaaggtcagcaatgccgttttcaagcggcccacagccgagtcgtcgaaaccaaacagatctgccagatagtcaaacaaacccagcgtt > 2:165269‑M1/1‑28 (MQ=255) | TTCGGGCTGCCAAAGCGTTTACGCGATGCACGGGCTAACAGCGCCGGAACAATTGCCGCCCAGATGGTAGCCGCTAAACCAGCATAACCAATGGCGTACAGGAATCCGTTCGGGAACAACAGCCCCCCCACAACTGGCGGGGCAAAGGTCAGCAATGCCGTTTTCAAGCGGCCCACAGCCGAGTCGTCGAAACCAAACAGATCTGCCAGATAGTCAAACAAACCCAGCGTTAC > NC_000913/3304685‑3304917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |