New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3160836 =	34 (1.090)	3 (0.100)	3/208	3.1	7.7%	coding (311/2220 nt)	ygiQ	Radical SAM superfamily protein
	?	NC_000913	3160864 =	39 (1.300)					coding (283/2220 nt)	ygiQ	Radical SAM superfamily protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAACGCTGGGTATAAACCAGTGTGGCGCGATCCGGGCGCTTACCCGCGACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGCCATCCCGAAGCTTGGG  >  NC_000913/3160704‑3160973                                                                                                                                     |                                                                                                                                          cAACGCTGGGTATAAACCAGTGTGGCGCGATCCGGGCGCTTACCCGCGACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAacac                                                                                                                                     <  1:414799/139‑1 (MQ=255)            ataAACCAGTGTGGCGCGTTCCGGGCGCTTACCCGCGACGTTATGCGGCGTGTAGGCATCGGCATGACGTAAACGGCGATCGGCGGGATAACGGTTGATCATCGGATCCATGTTGCCAGCAGTAACGCCGAAAAACAGa                                                                                                                          <  1:440361/139‑1 (MQ=255)                     tgtgGCGCGATCCGGGCGCTTACCCGCGACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTa                                                                                                                 >  2:97353/1‑139 (MQ=255)                          cgcgATCCGGGCGCTTACCCGCGACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAg                                                                                                            <  1:97353/139‑1 (MQ=255)                                         tACCCGCGACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAgtcgtc                                                                                             >  1:306404/1‑139 (MQ=255)                                         tACCCGCGACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAgtcgtc                                                                                             >  2:574033/1‑139 (MQ=255)                                             cgcgACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtg                                                                                         <  2:306404/139‑1 (MQ=255)                                              gcgACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtgc                                                                                        >  1:380860/1‑139 (MQ=255)                                                                tAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTggg                                                                      >  2:476668/1‑139 (MQ=255)                                                                   gCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCga                                                                   <  2:380860/139‑1 (MQ=255)                                                                       cGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCgatgat                                                               <  1:574033/139‑1 (MQ=255)                                                                            tGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGt                                                                                                                                          <  1:204904/59‑1 (MQ=255)                                                                            tGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGt                                                                                                                                          >  2:204904/1‑59 (MQ=255)                                                                                   aaCGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtgctg                                                                                      >  2:529221/1‑104 (MQ=255)                                                                                   aaCGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtgctg                                                                                      <  1:529221/104‑1 (MQ=255)                                                                                   aaCGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtg                                                                                         >  1:42257/1‑101 (MQ=255)                                                                                   aaCGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtg                                                                                         <  2:42257/101‑1 (MQ=255)                                                                                   aaCGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGaaa                                                   >  1:50595/1‑139 (MQ=255)                                                                                          aTCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTAcc                                                                                                               <  1:70073/72‑1 (MQ=255)                                                                                          aTCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTAcc                                                                                                               >  2:70073/1‑72 (MQ=255)                                                                                           tCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTgcg                                           <  2:50595/139‑1 (MQ=255)                                                                                                            gATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTg                                             <  2:72015/120‑1 (MQ=255)                                                                                                            gATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTg                                             >  1:72015/1‑120 (MQ=255)                                                                                                            gATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCg                          >  1:572074/1‑139 (MQ=255)                                                                                                            gATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCg                          >  1:126413/1‑139 (MQ=255)                                                                                                               catcGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtg                                                                                         >  2:222718/1‑73 (MQ=255)                                                                                                               catcGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTtg                                                                                         <  1:222718/73‑1 (MQ=255)                                                                                                                  cGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATc                    >  2:256516/1‑139 (MQ=255)                                                                                                                    aaTCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGc                  >  2:193049/1‑139 (MQ=255)                                                                                                                        cATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGCCATc              >  1:287998/1‑139 (MQ=255)                                                                                                                          tGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGCCATccc            >  1:598229/1‑139 (MQ=255)                                                                                                                               ccAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGCCATccc            <  2:590803/134‑1 (MQ=255)                                                                                                                               ccAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGCCATccc            >  1:590803/1‑134 (MQ=255)                                                                                                                                    agTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGCCATCCCGAAGCTTggg  <  2:126413/139‑1 (MQ=255)                                                                                                                                     |                                                                                                                                          CAACGCTGGGTATAAACCAGTGTGGCGCGATCCGGGCGCTTACCCGCGACGTTATCCGGCGTGTAGGCATCGTCATGACGTAAACGGCGATCGGCGGTATAACGGTTGATCATCGAATCCATGTTGCCAGCAGTAACACCGAAAAACAGATTCGGTTTACCCAGACGCATAAAGTCGTCTTTGCTGCTCCAGTCCGGCTGGGCGATGATCCCGACGCGAAAGCCCTGCGCTTCCAGCATACGACCGCAAATCGCCATCCCGAAGCTTGGG  >  NC_000913/3160704‑3160973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.