| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4097100 = | 65 (0.900) | 3 (0.040) | 3/204 | 6.6 | 4.6% | coding (349/1470 nt) | rhaB | rhamnulokinase |
| ? | NC_000913 | = 4097096 | 63 (0.940) | coding (353/1470 nt) | rhaB | rhamnulokinase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAGGGATTCGTATCGATAGCATTGGGATTGATACCTGGGGCGTGGACTTTGTGCTGCTCGACCAACAGGGTCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCACCAATGGCCTAATGGCGCAGGCACAACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4097241‑4097100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaacaacTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATGCCGGATTA < NC_000913/4097096‑4096961 GAAGGGATTCGTATCGATAGCATTGGGATTGATACCTGGGGCGTGGACTTTGTGCTGCTCGACCAACAGGGTCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCACCAATGGCCTAATGGCGCAGGCACAAC > 1:1452592/1‑139 AGGGATTCGTATCGATAGCATTGGGATTGATACCTGGGGCGTGGACTTTGTGCTGCTCGACCAACAGGGTCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCACCAATGGCCTAATGGCGCAGGCACAACAA > 1:440497/1‑139 TGCTCGACCAACAGGGTCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCACCAATGGCCTAATGGCGCAGGCACAACAACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAA < 2:234205/139‑1 TCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCACCAATGGCCTAATGGCGCAGGCACAACAACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGC < 1:1607179/128‑1 TCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCACCAATGGCCTAATGGCGCAGGCACAACAACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGC > 2:1607179/1‑128 AACAACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATGCCGGA < 2:10115/139‑1 ACAACTCGGCAGACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATGCCGGAT < 2:1192978/139‑1 AACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATGCCGGATTA > 1:581218/1‑139 AACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATGCCGGATTA > 2:1476327/1‑139 AACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAAT < 1:1546892/56‑1 AACTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAAT > 2:1546892/1‑56 CTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGG > 1:114691/1‑82 CTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGG < 2:114691/82‑1 GAAGGGATTCGTATCGATAGCATTGGGATTGATACCTGGGGCGTGGACTTTGTGCTGCTCGACCAACAGGGTCAGCGTGTGGGCCTGCCCGTTGCTTATCGCGATAGCCGCACCAATGGCCTAATGGCGCAGGCACAACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4097241‑4097100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaacaacTCGGCAAACGCGATATTTATCAACGTAGCGGCATCCAGTTTCTGCCCTTCAATACGCTTTATCAGTTGCGTGCGCTGACGGAGCAACAACCTGAACTTATTCCACACATTGCTCACGCTCTGCTGATGCCGGATTA < NC_000913/4097096‑4096961 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |