breseq  version 0.32.1  revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913566,1730CG57.0% 51.5 / 144.0 86pseudogene (204/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*NC_000913566,2770CT53.8% 5.0 / 112.7 78pseudogene (100/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*NC_0009132,087,2801.G51.5% 426.1 / inf 232intergenic (‑166/+49)yoeI/yeeYuncharacterized protein/LysR family putative transcriptional regulator
*NC_000913566,2450GA49.3% 0.1 / 97.7 69pseudogene (132/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*NC_000913566,2050TC48.7% ‑1.8 / 120.6 78pseudogene (172/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*NC_0009134,296,0600CT32.5% 57.6 / 30.8 40intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*NC_000913566,3230CT25.0% 111.4 / 35.2 64pseudogene (54/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*NC_000913566,3260TC25.0% 104.8 / 39.1 64pseudogene (51/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
*NC_000913566,3320TG22.9% 132.4 / 46.6 61pseudogene (45/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 78101649 (0.950)3 (0.060)
+ATGT
3/218 4.7 6.0% intergenic (+98/‑52) lysW/valZ tRNA‑Lys/tRNA‑Val
?NC_000913 = 781839 NA (NA)intergenic (+187/‑246) lysQ/nadA tRNA‑Lys/quinolinate synthase, subunit A
* ? NC_000913 = 78132243 (0.830)3 (0.060)
+GT
3/222 4.8 6.6% intergenic (+100/‑47) lysY/lysZ tRNA‑Lys/tRNA‑Lys
?NC_000913 = 781839 NA (NA)intergenic (+187/‑246) lysQ/nadA tRNA‑Lys/quinolinate synthase, subunit A