| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4861171 | 29 (0.940) | 12 (0.410) | 6/272 | 2.9 | 31.3% | intergenic (‑77/+160) | ligA/PP_4275 | DNA ligase/cell division protein ZipA |
| ? | NC_002947 | = 4861264 | 25 (0.850) | intergenic (‑170/+67) | ligA/PP_4275 | DNA ligase/cell division protein ZipA | |||||
AAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGC > NC_002947/4861115‑4861409 | aagaagaaGAGCAGCGTGGGGTGGGGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGcc < 2:424879/144‑1 (MQ=255) gCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg < 1:137713‑M2/150‑3 (MQ=255) cAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCggc < 1:471589‑M2/150‑4 (MQ=255) aaGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCCAGGGCGGTGATGCACCTGTAGGAAAGGGTTTACCCGCGAAGAGGCCggccca < 1:117823‑M2/150‑7 (MQ=255) gcagcTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGCCTGTGCGAGCCTCTTCGCGCGTAAACCCGCTTCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGcc > 1:125065/1‑149 (MQ=255) gtgCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACGAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACGACGAT‑Acccc > 2:297613/1‑149 (MQ=255) gggTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGGGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGc < 2:488509/150‑1 (MQ=255) gggTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGc < 2:244334/150‑1 (MQ=255) gACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg < 1:214682‑M2/103‑2 (MQ=255) gACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg > 2:214682‑M2/1‑102 (MQ=255) aCTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGgctgc > 2:308515/1‑150 (MQ=255) cgcgGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCt < 1:608031/150‑1 (MQ=255) ggTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGCAAgacacagtcaacagacacctggaaccccacgcaccaccacaagatgccactttgctttgcaagatttta < 1:44635‑M2/150‑70 (MQ=255) aCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCTggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaat < 1:626884‑M2/150‑75 (MQ=255) aCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCTggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaat < 1:563197‑M2/150‑75 (MQ=255) aCCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAAGAAGACACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCt > 1:584090/1‑150 (MQ=255) ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCTggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcc < 1:609852‑M2/150‑77 (MQ=255) ccGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTc > 1:57112/1‑150 (MQ=255) cGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCGggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctc > 1:484557‑M2/1‑73 (MQ=255) cGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctc < 2:484557‑M2/122‑50 (MQ=255) gCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaa < 1:716595‑M2/139‑68 (MQ=255) gCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaa > 2:716595‑M2/1‑72 (MQ=255) cTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCTggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcccat > 2:609852‑M2/1‑71 (MQ=255) aGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCTggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcccatgaccgccg > 2:626884‑M2/1‑63 (MQ=255) gggCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCa > 1:64867/1‑150 (MQ=255) cccTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAAc > 2:604440/1‑150 (MQ=255) ccTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCGGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACt > 2:150809/1‑150 (MQ=255) gggCGGTGCTGTACCTGTAGGAGCGGGCTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTcgac < 2:471589/150‑1 (MQ=255) gATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGc > 1:387604/1‑150 (MQ=255) gTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCTggcacagtcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcccatgaccgccgaaacccgtatcctgtaactgctggcgga > 2:563197‑M2/1‑35 (MQ=255) gTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTgg > 1:558179/1‑150 (MQ=255) tACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGc < 2:608800/150‑1 (MQ=255) aCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCg < 1:433511/150‑1 (MQ=255) tAGGAGCGGGTTTACCCGCGAAGAGGCCCGCACCGGC‑AGGACGATGGCGTTGACCGGCCAGCACGCCCTCAGGCTGGTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGt < 1:514645/150‑1 (MQ=255) gaGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGt < 2:592714/149‑1 (MQ=255) aCCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTg < 1:308515/150‑1 (MQ=255) ccGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGTGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAg < 2:277269/134‑1 (MQ=255) ccGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAg > 1:277269/1‑134 (MQ=255) gcgAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATg < 2:590463/141‑1 (MQ=255) gcgAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATg > 1:590463/1‑141 (MQ=255) aaGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTc > 1:498254/1‑150 (MQ=255) agGCCGGCCAAGGCACCGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGc > 2:84077/1‑150 (MQ=255) ggCCggcacaggcaacagacacctggaaccccacgcaccaccccaagctgctcttttgctttgcaagagaagacaaatcccatgaccgccgaaacccgtatcctcgaactgcgtgccgagctcgatcagcacaattatcgctactacgtg < 1:59321‑M2/150‑147 (MQ=255) | AAGCAAAAGAGCAGCTTGGGGTGGTGCGTGGGGTTCCAGGTGTCTGTTGACTGTGCCAGCCTCTTCGCGGGTAAACCCGCTCCCACAAGGGCGTCACATGCCCTAGGGCGGTGATGTACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACGACGAT‑ACCCGAACCGGCCAGCACGCCCTCAGGCTGCTCTTTCGTCTGGATCTGTCAGCGCTTCTGGGTTAGCGCACGGCGCTCGAACTCGACGATACGCTGGCGGTAGTGCTCGATGGTCTGGGCGGTCAGC > NC_002947/4861115‑4861409 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |