| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5984491 | 45 (1.070) | 13 (0.370) | 10/220 | 2.4 | 23.6% | intergenic (+31/+58) | PP_5242/ycaC‑II | GAF domain‑containing sensor histidine kinase/putative hydrolase |
| ? | NC_002947 | = 5984511 | 47 (1.350) | intergenic (+51/+38) | PP_5242/ycaC‑II | GAF domain‑containing sensor histidine kinase/putative hydrolase | |||||
CACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5984322‑5984491‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgcCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCACCGAA < NC_002947/5984511‑5984364 CACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC > 2:936477/1‑150CACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC > 2:514055/1‑150CACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC > 1:878998/1‑150CACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGACGTCCAGTGAGTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC > 1:545656/1‑150 CAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTC > 2:518782/1‑150 CAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTC > 1:53273/1‑150 CGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCG < 1:731064/150‑1 GGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGG < 2:545656/150‑1 GCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGACTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTAGCGGGTtt < 2:882678/150‑3 ATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAAC > 1:637734/1‑150 TGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACC > 1:634770/1‑150 GCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC < 2:794101/124‑1 GCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGC > 1:794101/1‑124 GTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAACCTGTACTGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAG > 2:238693/1‑150 TCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCG < 2:637734/150‑1 CGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG < 2:678873/150‑1 GGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGG < 2:110706/150‑1 GGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAACCTGTACTGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG > 1:692694/1‑146 GGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAACCTGTACTGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG < 2:692694/146‑1 TCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG < 1:493478/143‑1 GTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG > 1:815162/1‑112 GTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG < 2:815162/112‑1 GATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGG > 1:247599/1‑90 GATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGG < 2:247599/90‑1 TCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG > 1:696132/1‑81 TCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGG < 2:696132/81‑1 GCCTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGC > 1:985261/1‑150 CTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCG > 2:892439/1‑150 CTCTTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCG > 1:968867/1‑150 TTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGG < 1:892439/150‑1 TTCGCGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGG < 1:788966/150‑1 CGGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCT < 2:985261/150‑1 GGGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACAGCGACACCAACGCCTGCAGCTGCCCGCCGTGGGCCTG > 1:220490/1‑150 GGTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGA > 2:299631/1‑150 GTAAACCCGCTCCTACGGTCGGCTGTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAG > 1:514055/1‑150 GTAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAG > 1:215542/1‑150 TAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCG > 2:41632/1‑96 TAAACCCGCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCG < 1:41632/96‑1 CCGCTCCTACGGTCGGCTGTAGGGGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGA < 2:493478/143‑1 GCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCACCGAA > 1:936477/1‑150 GCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGC < 2:435746/44‑1 GCCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGC > 1:435746/1‑44 CACCAAGACCGGTGGCATGGGGATGGGCTTGGCGATCTGTAGTTCGGTGGCTCAGGCCCACGGCGGGCAGCTGCAGGCGCTGGTGTCGCAGTTGGGTGGATGCCGGATTCGTGTCAGTCTGCCTTTGAATCACGCATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5984322‑5984491‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgcCCCTACAGCCGACCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTATGCGTGATTCAAAGGCAGACTGACACGAATCCGGCATCCACCCAACTGCGACACCAGCGCCTGCAGCTGCCCGCCGTGGGCCTGAGCCACCGAA < NC_002947/5984511‑5984364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |