New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5477178	20 (0.390)	10 (0.290)	9/184	2.9	38.6%	intergenic (+43/+69)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein
	?	NC_002947	= 5477195	18 (0.510)					intergenic (+60/+52)	PP_4813/PP_4814	PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein

TCAGCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5476990‑5477178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcctgtgccggcctattcgcgggtaaacccgctcctacgATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGCC  <  NC_002947/5477195‑5477050                                                                                                                                                                                                                                                                                                                                                 TCAGCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTT                                                                                                                                                                                           >  1:1064854/1‑150   AGCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGC                                                                                                                                                                                         >  1:750384/1‑150    GCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCC                                                                                                                                                                                        <  1:541162/150‑1     CCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCT                                                                                                                                                                                       >  2:417592/1‑150       TGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGT                                                                                                                                                                                     >  1:922729/1‑150                 GCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTAT                                                                                                                                                                           >  1:55464/1‑150                     CGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGC                                                                                                                                                                       <  1:1102779/150‑1                      GCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCG                                                                                                                                                                      <  2:55464/150‑1                       CCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGG                                                                                                                                                                     <  2:750384/150‑1                              ACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACC                                                                                                                                                              >  1:356944/1‑150                                   GCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTC                                                                                                                                                         <  2:356944/150‑1                                      AGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                      >  2:1129725/1‑150                                      AGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGATGCGGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTA                                                                                                                                                      <  1:595635/150‑1                                                                  GTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGC                                                                                                                          <  1:460583/150‑1                                                                   TGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCG                                                                                                                         <  1:782428/150‑1                                                                     TTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGG                                                                                                                       <  1:687148/150‑1                                                                      TGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGT                                                                                                                      <  1:818296/150‑1                                                                                                   TTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                        <  1:1262227/119‑1                                                                                                   TTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                        >  2:1262227/1‑119                                                                                                       CCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGG                                                                                                                                                                     >  1:705131/1‑70                                                                                                       CCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGG                                                                                                                                                                     <  2:705131/70‑1                                                                                                         ATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGT                                                                                                                                    <  2:547185/101‑1                                                                                                         ATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGT                                                                                                                                    >  1:547185/1‑101                                                                                                                         AGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                        <  2:820806/97‑1                                                                                                                         AGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGG                                                                                                                        >  1:820806/1‑97                                                                                                                                                                   CTATTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGC                         >  1:679516/1‑150                                                                                                                                                                      TTCGCGGGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCAC                      >  1:946495/1‑150                                                                                                                                                                            GGTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGC                >  1:876439/1‑150                                                                                                                                                                             GTAAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCC               >  2:461833/1‑150                                                                                                                                                                               AAACCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGG             >  2:922729/1‑150                                                                                                                                                                                  CCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCca          >  1:375479/1‑148                                                                                                                                                                                  CCCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAA          >  2:303708/1‑150                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAAC         >  1:477456/1‑150                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAAC         >  2:620280/1‑150                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAAC         >  1:802767/1‑150                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCAT                  <  2:1006771/141‑1                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCAT                  >  1:1006771/1‑141                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCAGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAACGCCACGCATGCCGGCAAC         >  1:679796/1‑150                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAAT                                                                                   <  1:861708/76‑1                                                                                                                                                                                   CCGCTCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAAT                                                                                   >  2:861708/1‑76                                                                                                                                                                                       TCCTACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCA     <  1:303708/150‑1                                                                                                                                                                                          TACGATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATANGCCGGCACAGGCAACATCAATATTGATAACTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGGCGGGAACAACAGCa  >  1:599259/1‑149                                                                                                                                                                                                                                                                                                                                                 TCAGCCTGACATTGGTGCAACGCCAGCAGACCCTGCCAGCCCTGCCGCTGCGGGTGTGGTGGCTGGTGTTGCCGGCATGCGTGGCGCTGCTGGCGTTCTTCGCCATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5476990‑5477178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcctgtgccggcctattcgcgggtaaacccgctcctacgATAAGCGCGATCCCGTGCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAACATCAATATTGATACCTGACCAACGCCTGCGGCAACGCATGCATGGCGAAGAACGCCAGCAGCGCCACGCATGCCGGCAACACCAGCC  <  NC_002947/5477195‑5477050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.