New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5506637	31 (0.610)	15 (0.380)	12/208	2.5	39.9%	intergenic (+48/‑151)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506650	21 (0.530)					intergenic (+61/‑138)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease

TGGAAGGCGGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5506461‑5506637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAAC  <  NC_002947/5506650‑5506502                                                                                                                                                                                                                                                                                                                                          TGGAAGGCGGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGAGGGGTAGGGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTATGTTGTCTGTGCTGG                                                                                                                                                                                    >  1:78817/1‑150   GAAGGCGGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGAGGGGGGGGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCGTGTGCTGGCC                                                                                                                                                                                  >  1:85195/1‑150           CAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCG                                                                                                                                                                          >  1:868206/1‑150            AGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGG                                                                                                                                                                         <  2:1152018/150‑1                          TGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                                           >  2:436060/1‑150                            GTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAC                                                                                                                                                         >  1:710091/1‑150                            GTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTAGCGGGTTTACCCGCgaagag                                                                                                                                                         <  1:892403/150‑7                                 GGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGG                                                                                                                                                                         <  2:192485/129‑1                                 GGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGG                                                                                                                                                                         >  1:192485/1‑129                                  GGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCG                                                                                                                                                   >  1:487981/1‑150                                       ggTGTTGCCGCTGGTGGGGGTGTCGATGGGGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTCGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C                                                                                                                                             <  2:194445/148‑1                                        ATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑T                                                                                                                                           >  2:541173/1‑150                                          GTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCG                                                                                                                                         >  2:645646/1‑150                                           TTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                               >  2:560501/1‑129                                           TTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGC                                                                                                                                                               <  1:560501/129‑1                                             CCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAG                                                                                                                                      <  1:838374/150‑1                                              CCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                                           <  2:233504/130‑1                                              CCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCT                                                                                                                                                           >  1:233504/1‑130                                                  gGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCG                                                                                                                                 <  2:487981/149‑1                                                   gggGGGGGTGTCGATGGTGGTGATGTGGGGGGTGAATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGG                                                                                                                                <  2:114824/147‑1                                                   GGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGG                                                                                                                                <  1:645646/150‑1                                                   GGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGG                                                                                                                                <  2:880552/150‑1                                                   GGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGG                                                                                                                                <  2:57144/150‑1                                                     gGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGT                                                                                                                              <  1:541173/149‑1                                                             TCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                             <  2:1102735/113‑1                                                             TCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTC                                                                                                                                                             >  1:1102735/1‑113                                                                        GATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTAC                                                                                                                          <  2:246504/135‑1                                                                        GATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTAC                                                                                                                          >  1:246504/1‑135                                                                                                      GCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGG                                                                                                                                <  1:1126667/99‑1                                                                                                      GCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGG                                                                                                                                >  2:1126667/1‑99                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACCTCACC                             >  2:85195/1‑150                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGG                                                                 >  2:154178/1‑114                                                                                                                                                      GCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGGAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGG                                                                 <  1:154178/114‑1                                                                                                                                                       CCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCA                            >  1:681126/1‑150                                                                                                                                                       CCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCA                            <  2:681126/150‑1                                                                                                                                                              GCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGA                     >  1:436060/1‑150                                                                                                                                                              GCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACA                                                                                                       <  2:1161077/68‑1                                                                                                                                                              GCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACA                                                                                                       >  1:1161077/1‑68                                                                                                                                                                       CCCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCAC            >  2:811548/1‑150                                                                                                                                                                        aCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCGAACTATCCACCCCCCACATCACCACCATCGACACCCCCACC           >  2:868206/2‑150                                                                                                                                                                        CCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCCCCACCATCGACACCCCCACC           >  1:250791/1‑150                                                                                                                                                                        CCGCTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACC           >  1:26967/1‑150                                                                                                                                                                           CTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACA                                                                                                       <  2:7039/55‑1                                                                                                                                                                           CTCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACA                                                                                                       >  1:7039/1‑55                                                                                                                                                                            TCCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCG       >  2:959275/1‑150                                                                                                                                                                             CCTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGG      <  1:462632/150‑1                                                                                                                                                                              CTACAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCACCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACACCACCACCACCGACACCCCCCCCAcccgc     >  2:468649/1‑145                                                                                                                                                                                ACAACGCGGACC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAA   >  2:78817/1‑150                                                                                                                                                                                 CAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAAC  >  2:932062/1‑150                                                                                                                                                                                                                                                                                                                                          TGGAAGGCGGCAGTGGCCGTGATGCTGGTGCTGGGGGTGATGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5506461‑5506637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacAACGCGGTCC‑C‑TCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCAACACAAGGCTCAAGCGCTGGCCAAGACCCGGCGGCGCCTCACCACCAAACTATCCACCCCCCACATCACCACCATCGACACCCCCACCAGCGGGAAC  <  NC_002947/5506650‑5506502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.