New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5506637	31 (0.610)	15 (0.380)	12/208	2.5	39.9%	intergenic (+48/‑151)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease
	?	NC_002947	= 5506650	21 (0.530)					intergenic (+61/‑138)	PP_4839/cycA	iron‑regulated membrane protein/D‑alanine/beta‑alanine/D‑serine/glycine permease

TGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACG  >  NC_002947/5506501‑5506793                                                                                                                                                        |                                                                                                                                                 tGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGtt                                                                                                                                                  <  2:811252/150‑1 (MQ=255) tGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGtt                                                                                                                                                  <  2:8321/150‑1 (MQ=255)  gTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTg                                                                                                                                                 >  2:932062‑M2/1‑149 (MQ=255)   ttCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGTCCGCGTTgt                                                                                                                                                >  2:78817‑M2/1‑148 (MQ=255)     gcgggtggggggggtgTCGGTGGTGGTGGTGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGGTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtag                                                                                                                                              >  2:468649‑M2/6‑146 (MQ=255)      ccGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtagg                                                                                                                                             <  1:462632‑M2/150‑6 (MQ=255)       cGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtagga                                                                                                                                            >  2:959275‑M2/1‑144 (MQ=255)           ggtggGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgg                                                                                                                                        >  1:26967‑M2/1‑140 (MQ=255)           ggtggGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTCGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgt                                                                                                                                        >  2:868206‑M2/1‑140 (MQ=255)           ggtggGGGTGTCGATGGTGGGGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgg                                                                                                                                        >  1:250791‑M2/1‑140 (MQ=255)            gtggGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcggg                                                                                                                                       >  2:811548‑M2/1‑139 (MQ=255)                     tCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGCGGTCC‑C‑TCgtaggagcgggtttacccgc                                                                                                                              >  1:436060‑M2/1‑130 (MQ=255)                            tggtgATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagagg                                                                                                                       <  2:681126‑M2/150‑28 (MQ=255)                            tggtgATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagagg                                                                                                                       >  1:681126‑M2/1‑123 (MQ=255)                             ggtgAGGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggc                                                                                                                      >  2:85195‑M2/1‑122 (MQ=255)                               tgATGTGGGGGGTGGATAGTTTGGTGCTGAGGCGTCGCCGTTTCTTGGCCAGCGCGCGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCATACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCg                                                                                                                    <  1:334693/150‑1 (MQ=37)                                       ggggTTGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTGGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGc                                                                                                            <  2:26410/150‑1 (MQ=255)                                                         gtgAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGc                                                                                                            >  1:159211/1‑132 (MQ=255)                                                         gtgAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGc                                                                                                            <  2:159211/132‑1 (MQ=255)                                                                 ccgccgGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTCCGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggc                                                                                                                      <  1:154178‑M2/114‑29 (MQ=255)                                                                 ccgccgGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggc                                                                                                                      >  2:154178‑M2/1‑86 (MQ=255)                                                                              gCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAg                                                                                                              <  1:207937/109‑1 (MQ=255)                                                                              gCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAg                                                                                                              >  2:207937/1‑109 (MQ=255)                                                                               ccAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑cc                                                                   >  2:1048134/1‑150 (MQ=255)                                                                                           ccTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAAc                                                       <  1:1048134/150‑1 (MQ=255)                                                                                                       tgtgCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgc                                                                                                                              <  2:1161077‑M2/68‑21 (MQ=255)                                                                                                       tgtgCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgc                                                                                                                              >  1:1161077‑M2/1‑48 (MQ=255)                                                                                                       tgtgCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggag                                                                                                                                           <  2:7039‑M2/55‑8 (MQ=255)                                                                                                       tgtgCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggag                                                                                                                                           >  1:7039‑M2/1‑48 (MQ=255)                                                                                                       tgtgCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAAcgcgc                                                   <  1:562769/142‑1 (MQ=255)                                                                                                       tgtgCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAAcgcgc                                                   >  2:562769/1‑142 (MQ=255)                                                                                                             ggCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTtagcctagcc                                     >  2:826365/1‑150 (MQ=255)                                                                                                                ctctTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCaga                                                                                    >  1:1084037/1‑101 (MQ=255)                                                                                                                ctctTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCaga                                                                                    <  2:1084037/101‑1 (MQ=255)                                                                                                                          gTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatc                                        >  1:246504‑M2/1‑29 (MQ=255)                                                                                                                          gTAAACCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatc                                        <  2:246504‑M2/135‑107 (MQ=255)                                                                                                                          gTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGAc                        <  1:826365/150‑1 (MQ=255)                                                                                                                           tAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTg                                                           >  1:76780/1‑114 (MQ=255)                                                                                                                           tAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTg                                                           <  2:76780/114‑1 (MQ=255)                                                                                                                              aCCCGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccggtacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccc                     <  1:541173‑M2/150‑126 (MQ=255)                                                                                                                              aCCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACaaga                    >  1:816549/1‑150 (MQ=255)                                                                                                                               cccGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGc                                  <  1:655223/135‑1 (MQ=255)                                                                                                                               cccGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGc                                  >  2:655223/1‑135 (MQ=255)                                                                                                                                ccGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccggtacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccacc                   <  2:57144‑M2/150‑128 (MQ=255)                                                                                                                                ccGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactattcaccccccacatcaccaccatcgacacccccccc                   <  2:114824‑M2/150‑128 (MQ=255)                                                                                                                                ccGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccacc                   <  2:880552‑M2/150‑128 (MQ=255)                                                                                                                                ccGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccacc                   <  1:645646‑M2/150‑128 (MQ=255)                                                                                                                                ccGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgc                                                                      <  1:1126667‑M2/99‑77 (MQ=255)                                                                                                                                ccGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgc                                                                      >  2:1126667‑M2/1‑23 (MQ=255)                                                                                                                                 cGCTCCTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccggtacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccaccc                  <  2:487981‑M2/150‑129 (MQ=255)                                                                                                                                      cTACGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccaccagcggg             <  1:838374‑M2/150‑134 (MQ=255)                                                                                                                                       tACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTGACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAg           >  2:159319/1‑150 (MQ=255)                                                                                                                                         cGA‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccagcacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccaccagcgggaac          >  2:645646‑M2/1‑14 (MQ=255)                                                                                                                                           a‑G‑GGACCGCGTTgtaggagcgggtttacccgcgaagaggccggtacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccaccagcgggaacat        >  2:541173‑M2/1‑12 (MQ=255)                                                                                                                                             g‑ggACCGCGTTgtaggagcgggtttacccgcgaagaggccggtacaggcgacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcacccccatcgacacccccaccagcggcaacacc       <  2:194445‑M2/150‑140 (MQ=255)                                                                                                                                                  ccGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTGGTGTTGCCCAAACGGACCGGGTG‑GTTGTCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACg  >  1:468914/1‑150 (MQ=25)                                                                                                                                                   cgcgTTgtaggagcgggtttacccgcgaagaggccggtacaggcaacacaaggctcaagcgctggccaagacccggcggcgcctcaccaccaaactatccaccccccacatcaccaccatcgacacccccaccagcgggaacatcacccc  >  1:487981‑M2/1‑6 (MQ=255)                                                                                                                                                        |                                                                                                                                                 TGTTCCCGCTGGTGGGGGTGTCGATGGTGGTGATGTGGGGGGTGGATAGTTTGGTGGTGAGGCGCCGCCGGGTCTTGGCCAGCGCTTGAGCCTTGTGTTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACGA‑G‑GGACCGCGTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACAGGCGAAATGCTGAGCCGAAAATGCAGAGTCGATCTGTCGCG‑CCCCGATCTGGAACGCGCGTGTTAGCCTAGCCGGCTACCTCTGACAAGAAGACTGCAGCCTATGACG  >  NC_002947/5506501‑5506793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.