New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419584	11 (0.240)	13 (0.380)	10/200	2.5	60.0%	intergenic (‑67/+70)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419614	9 (0.260)					intergenic (‑97/+40)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

GTCCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1419404‑1419584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcacgcccgctcccacaggGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCTTC  <  NC_002947/1419614‑1419467                                                                                                                                                                                                                                                                                                                                             GTCCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      >  2:121519/1‑150 GTCCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      <  1:817775/150‑1 GTCCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGG‑TCAGTGGGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      >  1:583721/1‑150   CCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC                                                                                                                                                                                    <  2:119291/150‑1     TGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCT                                                                                                                                                                                  >  1:18624/1‑150                 CCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAC                                                                                                                                                                      <  2:18624/150‑1                 CCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAC                                                                                                                                                                      <  2:589154/150‑1                           TGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      >  1:118941/1‑124                           TGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG                                                                                                                                                                                      <  2:118941/124‑1                            GCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCA                                                                                                                                                           <  2:457166/150‑1                                AACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG                                                                                                                                                       <  1:906699/150‑1                                AACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG                                                                                                                                                       >  1:754694/1‑150                                      GGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG                                                                                                                                                       <  2:547204/144‑1                                      GGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG                                                                                                                                                       >  1:547204/1‑144                                              GTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GT                                                                                                                                        >  1:571585/1‑150                                                  TTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                                                            >  1:957107/1‑111                                                  TTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                                                            <  2:957107/111‑1                                                             GTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGTGTGGCCTGGGCTGGC                                                                                                                                                                                    <  2:849045/92‑1                                                             GTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGC                                                                                                                                                                                    >  1:849045/1‑92                                                                          ttaCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                                                            >  2:284735/4‑87                                                                          TTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGC                                                                                                                                                                            <  1:284735/87‑1                                                                             CCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGC                                                                                                         <  2:795363/150‑1                                                                               GACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGT                                                                                                       <  2:571585/150‑1                                                                                           TTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGG                                                                                                           >  1:557565/1‑134                                                                                           TTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGG                                                                                                           <  2:557565/134‑1                                                                                                      TTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGG                                                                                                           >  2:466249/1‑124                                                                                                      TTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGG                                                                                                           <  1:466249/124‑1                                                                                                      TTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGG                                                                                                                 >  1:1007013/1‑118                                                                                                      TTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGG                                                                                                                 <  2:1007013/118‑1                                                                                                                                CTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGG                                                                                                           >  2:385109/1‑98                                                                                                                                CTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGG                                                                                                           <  1:385109/98‑1                                                                                                                                        TGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGC                                                                                                             <  2:441209/88‑1                                                                                                                                        TGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGC                                                                                                             >  1:441209/1‑88                                                                                                                                                          ttcgTCGCGGGCACGCCGGCTCCCACAGGGTCACC‑GAGCCAGTCACGCCCGGCACAGTACCTGGGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAA                             <  1:59667/146‑1                                                                                                                                                                      ACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCA                                                                                       >  1:615172/1‑80                                                                                                                                                                      ACGCCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCA                                                                                       <  2:615172/80‑1                                                                                                                                                                         CCCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCAACAGACAACACAACAGAACCCACCACAGTCGGC              >  1:289754/1‑150                                                                                                                                                                          CCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCA             >  1:121519/1‑150                                                                                                                                                                          CCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                              >  1:903956/1‑69                                                                                                                                                                          CCGCTCCCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                              <  2:903956/69‑1                                                                                                                                                                                CCACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCT       >  2:1004365/1‑150                                                                                                                                                                                 CACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAA            >  1:344973/1‑144                                                                                                                                                                                 CACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAA            <  2:344973/144‑1                                                                                                                                                                                  ACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGC     >  2:525659/1‑150                                                                                                                                                                                  ACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGC     >  2:950467/1‑150                                                                                                                                                                                  ACAGGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGC     <  1:1004365/150‑1                                                                                                                                                                                  ACAGGGTAAACACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGC     >  2:583721/1‑150                                                                                                                                                                                     GGGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCTTC  <  1:525659/150‑1                                                                                                                                                                                                                                                                                                                                             GTCCTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGT‑TGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1419404‑1419584 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggcacgcccgctcccacaggGTCACCACAGCC‑GTCACGCACTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCCCAGGCAACCCAGAATCCAGGGAAACAAAACAATGCCCACCGACAACACAACAGAACCCACCACAGTCGGCAAGACCTGCTTC  <  NC_002947/1419614‑1419467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.