| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1780127 | 46 (1.020) | 18 (0.470) | 17/226 | 1.5 | 28.3% | intergenic (+44/+62) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | = 1780151 | 52 (1.350) | intergenic (+68/+38) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
GGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1779974‑1780127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaggtacAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACTTGCCGCACCACCTCATCCCCCACCAGGTG < NC_002947/1780151‑1780003 GGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAG < 1:541434/150‑1 TCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCgaa > 2:962327/1‑120 TCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCgaa < 1:962327/123‑4 AGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGC > 1:759390/1‑150 CCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGTCCCTTCGCGGGCAGGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTA < 2:1016285/150‑1 TGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAA‑CCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTG < 2:1109284/150‑1 GGGGATGAGGTGGTGCGGCAAGTACGGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGG < 2:147549/150‑1 TGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCG < 2:1128350/150‑1 AGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGG < 2:759390/150‑1 GCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCT < 2:634067/129‑1 GCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCT > 1:634067/1‑129 TGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAA < 2:792958/101‑1 TGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAA > 1:792958/1‑101 TGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGG > 2:979944/1‑116 TGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGG < 1:979944/116‑1 GATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAG < 2:316242/105‑1 GATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAG > 1:316242/1‑105 CTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCA < 1:1091403/86‑1 CTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCA > 2:1091403/1‑86 TTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCG‑CTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACC < 2:554779/142‑1 TTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTG‑CGCTTGAA‑ATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACC > 1:554779/1‑142 CCGCTCCCACAGGTACAGCGCTG‑A‑TTTCAAGCGAAGCGTAGCACCTGAAGGAGCGGGAGCGGTCGCGAAGGGCCTTGATAGGGTCTACTTGACTTAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACTTGCCGCACCACCTC < 2:985063/150‑1 CCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACT < 2:175911/130‑1 CCACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACT > 1:175911/1‑130 ACAGGTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACTCGCCGCACCACCTCATCCCCCA > 1:1017252/1‑150 GTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACTTGCCGCACCACCTCATCCCCCACCAG > 1:712110/1‑150 GTACAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACTTGCCGCACCACCTCATCCCCCACCAG < 1:35729/150‑1 CAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGGACTTGCCGCACCACCTCATCCCCCAagatcgg > 1:294449/1‑143 GGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1779974‑1780127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccgctcccacaggtacAGCGCTG‑A‑TTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGCCTTGATAGGGTCTACTTGACTGAACCCAGGTTCGCCTCACTCATATCCAGCTCACCCAGTACTTGCCGCACCACCTCATCCCCCACCAGGTG < NC_002947/1780151‑1780003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |