| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1899260 = | 55 (1.220) | 11 (0.280) | 10/234 | 3.0 | 21.6% | intergenic (+288/‑232) | PP_t18/PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase |
| ? | NC_002947 | 1899320 = | 31 (0.780) | intergenic (+348/‑172) | PP_t18/PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase | |||||
CGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1899316‑1899260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTT > NC_002947/1899320‑1899465 CGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGC > 2:924461/1‑82CGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGC < 1:924461/82‑1 CCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG < 2:1127901/44‑1 CCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGG > 1:1127901/1‑44 CACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGC > 2:627279/1‑150 ACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCAC > 1:179157/1‑132 ACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCAC < 2:179157/132‑1 ACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAC < 2:1056953/117‑1 ACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAC > 1:1056953/1‑117 AGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCC > 2:713091/1‑150 GGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCT > 1:619045/1‑87 GGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCT < 2:619045/87‑1 AAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCG > 2:683774/1‑150 CCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGGCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCCCACCACTTCAATACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCA > 2:416267/1‑150 CTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAG > 1:490776/1‑150 TGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGC < 1:545686/150‑1 GGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTT > 2:561516/1‑150 CGCTCCCACAGGGATATCGCAAGGCCTGAGGGCGGCGCAGTACCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1899316‑1899260‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTT > NC_002947/1899320‑1899465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |