| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5224548 = | 3 (0.070) | 16 (0.380) | 13/246 | 2.5 | 73.1% | intergenic (‑204/+175) | PP_4603/PP_4604 | transposase/DMT superfamily permease |
| ? | NC_002947 | 5224584 = | 9 (0.210) | intergenic (‑240/+139) | PP_4603/PP_4604 | transposase/DMT superfamily permease | |||||
CAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACC > NC_002947/5224427‑5224692 | ggccctttcgcgggtaaaccgccctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAAcc > 1:997003‑M1/122‑150 (MQ=255) tgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcgg < 2:147267‑M1/9‑1 (MQ=255) tgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcgg > 1:147267‑M1/98‑106 (MQ=255) acccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg < 2:619897‑M1/8‑1 (MQ=255) acccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg > 1:619897‑M1/87‑94 (MQ=255) ccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGTTGGCCCTACCGGGCCAACCGcc < 2:78171‑M1/32‑1 (MQ=255) ccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGTTGGCCCTACCGGGCCAACCGcc > 1:78171‑M1/85‑116 (MQ=255) cttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGTTGGCCCTACCGGGCCAAcc > 2:509380‑M1/79‑107 (MQ=255) cttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGTTGGCCCTACCGGGCCAAcc < 1:509380‑M1/29‑1 (MQ=255) ttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGc > 1:354586‑M1/78‑101 (MQ=255) ttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGc < 2:354586‑M1/24‑1 (MQ=255) gggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggc < 2:701480‑M1/7‑1 (MQ=255) gggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggc > 1:701480‑M1/74‑80 (MQ=255) aacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg > 1:711380‑M1/53‑60 (MQ=255) aacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagAAAAggcg < 2:711380‑M1/8‑1 (MQ=255) gcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCctt < 1:27244‑M1/34‑1 (MQ=255) gcttcagttccgcagcgacgctgacattttgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCctt > 2:27244‑M1/38‑71 (MQ=255) gctgacattttgaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTtgc > 1:707367‑M1/19‑109 (MQ=255) gctgacattttgaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTtgc < 2:707367‑M1/91‑1 (MQ=255) tttgaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCtacaggtact < 2:373773‑M1/140‑5 (MQ=255) tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGtt > 1:730762/1‑150 (MQ=32) tgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGttt < 1:214659‑M1/142‑1 (MQ=255) aCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTa < 2:770826/150‑1 (MQ=34) cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGATCGGTGATGTCCTAGAGGGCGGTTTAc > 1:536843/1‑150 (MQ=255) aaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTAcc < 1:447009‑M1/145‑1 (MQ=255) gAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg > 1:790798‑M1/2‑122 (MQ=255) gAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg < 2:790798‑M1/121‑1 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGtt < 2:388739‑M1/88‑1 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGtt > 1:388739‑M1/1‑88 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCgg > 2:917563‑M1/1‑139 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCgg < 1:917563‑M1/139‑1 (MQ=255) | CAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACC > NC_002947/5224427‑5224692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |