| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5224548 = | 3 (0.070) | 16 (0.380) | 13/246 | 2.5 | 73.1% | intergenic (‑204/+175) | PP_4603/PP_4604 | transposase/DMT superfamily permease |
| ? | NC_002947 | 5224584 = | 9 (0.210) | intergenic (‑240/+139) | PP_4603/PP_4604 | transposase/DMT superfamily permease | |||||
CAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCA > NC_002947/5224440‑5224721 | ggtaaaccgccctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggctggccctaccgggccaaccgccttttctttt < 1:447009‑M2/5‑1 (MQ=255) aaaccgccctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggttggcccggtagggccagccgccttttCTTTTTCa < 1:214659‑M2/8‑1 (MQ=255) agtacctgtaggagatcacccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagcaaaaggcggctggccctaccgggccaaccgccttttCTTTTTCaaa < 2:373773‑M2/10‑1 (MQ=255) ccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagcaaaaggcggctggccctaccgggccaaccgccttttc < 2:790798‑M2/1‑1 (MQ=255) ccagcccttccgggctgcgctgtcgcgcagcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagcaaaaggcggctggccctaccgggccaaccgccttttc > 1:790798‑M2/122‑122 (MQ=255) gcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggctggccctaccgggccaaccgccttttCTTTTTCAAAATGTCAGc > 1:707367‑M2/92‑109 (MQ=255) gcaaacatgaggtgtacggcttcagttccgcagcgacgctgacattttgaaaaagaaaaggcggctggccctaccgggccaaccgccttttCTTTTTCAAAATGTCAGc < 2:707367‑M2/18‑1 (MQ=255) gctgacattttgaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTtgc < 2:707367‑M1/91‑1 (MQ=255) gctgacattttgaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTtgc > 1:707367‑M1/19‑109 (MQ=255) tttgaaaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCtacaggtact < 2:373773‑M1/140‑5 (MQ=255) tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGtt > 1:730762/1‑150 (MQ=32) tgaaaaagAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGttt < 1:214659‑M1/142‑1 (MQ=255) aCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTa < 2:770826/150‑1 (MQ=34) cAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGATCGGTGATGTCCTAGAGGGCGGTTTAc > 1:536843/1‑150 (MQ=255) aaaagAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTAcc < 1:447009‑M1/145‑1 (MQ=255) gAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg < 2:790798‑M1/121‑1 (MQ=255) gAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg > 1:790798‑M1/2‑122 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGtt < 2:388739‑M1/88‑1 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGtt > 1:388739‑M1/1‑88 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCgg < 1:917563‑M1/139‑1 (MQ=255) AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCgg > 2:917563‑M1/1‑139 (MQ=255) aaggcggttggcccggtagggccagccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGc < 1:27244‑M2/37‑1 (MQ=255) aaggcggttggcccggtagggccagccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGc > 2:27244‑M2/35‑71 (MQ=255) GGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGaaa < 1:26966‑M1/148‑1 (MQ=255) GGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGaaa > 2:26966‑M1/1‑148 (MQ=255) ggcggttggcccggtagggccaaccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg > 1:78171‑M2/33‑116 (MQ=255) ggcggttggcccggtagggccaaccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTgg < 2:78171‑M2/84‑1 (MQ=255) GCGGTTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGGCCGGAAg < 2:765290‑M1/109‑1 (MQ=255) GCGGTTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAg > 1:765290‑M1/1‑109 (MQ=255) ggttggcccggtagggccagccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGggcc > 1:997003‑M2/30‑150 (MQ=255) ggttggcccggtagggccaaccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAg < 1:509380‑M2/78‑1 (MQ=255) ggttggcccggtagggccaaccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAg > 2:509380‑M2/30‑107 (MQ=255) GCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAg > 1:47454‑M1/1‑64 (MQ=255) GCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAg < 2:47454‑M1/64‑1 (MQ=255) gCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGATGGCCGCTCTCCGACATGGCGGTTTACCCGCGAAAGGGCCGGccc > 2:838765/1‑150 (MQ=17) gcccggtagggccagccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGaa < 2:354586‑M2/77‑1 (MQ=255) gcccggtagggccagccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGaa > 1:354586‑M2/25‑101 (MQ=255) ccTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAg > 2:443378/1‑150 (MQ=255) ccTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAg < 2:343011/150‑1 (MQ=255) cAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACcatca < 1:332329/150‑1 (MQ=255) aCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGGGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAgg > 1:272751/1‑128 (MQ=255) aCCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGGGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAgg < 2:272751/128‑1 (MQ=255) ccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACa < 2:147267‑M2/97‑1 (MQ=255) ccgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACa > 1:147267‑M2/10‑106 (MQ=255) cgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGtt < 2:711380‑M2/52‑1 (MQ=255) cgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGtt > 1:711380‑M2/9‑60 (MQ=255) cgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt < 2:619897‑M2/86‑1 (MQ=255) cgccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGt > 1:619897‑M2/9‑94 (MQ=255) gccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGccc < 2:701480‑M2/73‑1 (MQ=255) gccttttCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGccc > 1:701480‑M2/8‑80 (MQ=255) | CAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCA > NC_002947/5224440‑5224721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |