New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6006595 =	25 (0.750)	10 (0.410)	8/200	1.9	49.6%	intergenic (+7/+92)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	6006679 =	2 (0.080)					intergenic (+91/+8)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator

CGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6006774‑6006595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCG  >  NC_002947/6006679‑6006819                                                                                                                                                                                                                                                                                                                                   CGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGT                                                                                                                                                                             <  2:321178/150‑1  GAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTG                                                                                                                                                                            <  2:131223/150‑1   AGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGG                                                                                                                                                                           <  2:627127/150‑1   AGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGG                                                                                                                                                                           <  1:353667/150‑1      GGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGTCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAG                                                                                                                                                                        <  2:790022/150‑1         TGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGCTGTAGGCCTCGAACCGCTTCTTTGCTCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG                                                                                                                                                                     <  1:261376/150‑1               GGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGC                                                                                                                                                               <  1:267747/150‑1               GGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGC                                                                                                                                                               <  2:593071/150‑1                                                CAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGC                                                                                                                                                               <  1:349785/117‑1                                                CAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGC                                                                                                                                                               >  2:349785/1‑117                                                                                                                           TCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCC                                                                                                                 >  1:237315/1‑88                                                                                                                           TCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCC                                                                                                                 <  2:237315/88‑1                                                                                                                            CCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAA                                                                                                      >  1:152819/1‑98                                                                                                                            CCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAA                                                                                                      <  2:152819/98‑1                                                                                                                             CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT                                                 >  1:600099/1‑150                                                                                                                             CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT                                                 >  2:14724/1‑150                                                                                                                             CCACAGGTCGAAGACGATGTACCTATGTGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAAACCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT                                                 >  2:452353/1‑150                                                                                                                               ACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTACCGCCACCTCGCCTTCCAGGAACGCACTCACCCGCCGCAACCGCTCG                                               >  2:3665/1‑150                                                                                                                                             CTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGC                                                                                             <  2:281888/90‑1                                                                                                                                             CTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGC                                                                                             >  1:281888/1‑90                                                                                                                                                     GTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCC                         >  2:486440/1‑150                                                                                                                                                              GGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGT                >  2:548295/1‑150                                                                                                                                                                   GCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGC                             >  2:244408/1‑132                                                                                                                                                                   GCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGC                             <  1:244408/132‑1                                                                                                                                                                     CCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATC         >  1:97566/1‑150                                                                                                                                                                     CCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGACTTCTTGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATC         >  1:452748/1‑150                                                                                                                                                                       GCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCA       <  1:131223/150‑1                                                                                                                                                                         GAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATG     <  1:730114/150‑1                                                                                                                                                                            GAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCCAATCCATTGACGCCACCTCGCATTCCAGGAACGCACTCATGCTGCGCAACCGCTGGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCG  >  2:91751/1‑150                                                                                                                                                                                                                                                                                                                                   CGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6006774‑6006595 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCG  >  NC_002947/6006679‑6006819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.