New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6006595 =	25 (0.750)	10 (0.410)	8/200	1.9	49.6%	intergenic (+7/+92)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator
	?	NC_002947	6006679 =	2 (0.080)					intergenic (+91/+8)	ydcJ/PP_5261	metalloprotein/LysR family transcriptional regulator

GGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGC  >  NC_002947/6006454‑6006654                                                                                                                                              |                                                            cggcatggattactacctggtgtggccgcgcacccggcgaggcggccagcggttgcgcagcatgagtgcgttcctggaatgcgaggtggcgtcaatggattggccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCctc                                                     >  2:91751‑M1/142‑150 (MQ=255)    catggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTc                                                  <  1:730114‑M1/12‑1 (MQ=255)      tggattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTcgc                                                <  1:131223‑M1/14‑1 (MQ=255)        gattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCgg                                              >  1:97566‑M1/135‑150 (MQ=255)        gattactacctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttccaagaagtcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCgg                                              >  1:452748‑M1/135‑150 (MQ=255)               acctggtgtggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGcc                                       >  2:548295‑M1/128‑150 (MQ=255)                cgcgAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGGGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGccc                                      <  2:428461/150‑1 (MQ=255)                        ggccgcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCcac                              >  2:486440‑M1/119‑150 (MQ=255)                         ttCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCcaca                             <  2:723288/150‑1 (MQ=255)                            gcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGc                                            <  1:244408‑M1/18‑1 (MQ=255)                            gcgcacccggcgaggcggcgagcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGc                                            >  2:244408‑M1/115‑132 (MQ=255)                               gcggcgCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTcgc                                                >  2:329374/1‑125 (MQ=255)                               gcggcgCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTcgc                                                <  1:329374/125‑1 (MQ=255)                                 ggcgCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAgg                     <  2:348015/150‑1 (MQ=255)                                  gcgcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAggg                    <  1:586964/150‑1 (MQ=255)                                    gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCa                  <  1:72573/150‑1 (MQ=255)                                     cTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCAt                 <  2:308567/150‑1 (MQ=255)                                      tGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATa                >  1:691314/1‑150 (MQ=255)                                       ggggTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATAc               <  2:164559/150‑1 (MQ=255)                                         ggTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTc                                  >  1:71935/1‑129 (MQ=255)                                         ggTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTc                                  <  2:71935/129‑1 (MQ=255)                                          gTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGAc            <  1:389439/150‑1 (MQ=255)                                              cgagcggttgcggcgggtgagtgcgttcctggaaggcgaggtggcggtaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt        >  2:3665‑M1/97‑150 (MQ=255)                                               aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg       <  1:559846/150‑1 (MQ=255)                                               aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg       <  2:315052/150‑1 (MQ=255)                                                ggTACAGGAGGAGCTGGGGCTGGATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg      <  2:285416/150‑1 (MQ=255)                                                agcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggttttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCACATAGGTACATCGTCTTCGACCTGTgg      >  2:452353‑M1/95‑150 (MQ=255)                                                agcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgtACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg      >  2:14724‑M1/95‑150 (MQ=255)                                                agcggttgcggcggttgagtgcgttcctggaaggcgaggtggcggcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg      >  1:600099‑M1/95‑150 (MQ=255)                                                 gTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGc                                    <  1:674360/119‑1 (MQ=255)                                                 gTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGc                                    >  2:674360/1‑119 (MQ=255)                                                    cAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc  <  2:691314/150‑1 (MQ=255)                                                                  gcTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCAt                 >  2:287229/1‑121 (MQ=255)                                                                  gcTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCAt                 <  1:287229/121‑1 (MQ=255)                                                                                            gcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAg                      <  2:281888‑M1/40‑1 (MQ=255)                                                                                            gcaatggatttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAg                      >  1:281888‑M1/51‑90 (MQ=255)                                                                                              cTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc  >  1:695019/1‑108 (MQ=255)                                                                                              cTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc  <  2:695019/108‑1 (MQ=255)                                                                                                    gCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAg                      >  2:167023/1‑82 (MQ=255)                                                                                                    gCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAg                      <  1:167023/82‑1 (MQ=255)                                                                                                     ttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTggg     <  2:152819‑M1/57‑1 (MQ=255)                                                                                                     ttgccggatgtggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTggg     >  1:152819‑M1/42‑98 (MQ=255)                                                                                                                ggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGa    <  2:237315‑M1/58‑1 (MQ=255)                                                                                                                ggaaatcctgccgcgtctttgatcacctgcACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGa    >  1:237315‑M1/31‑88 (MQ=255)                                                                                                                                              |                                                            GGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGC  >  NC_002947/6006454‑6006654

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.