| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4647641 | 11 (0.330) | 9 (0.380) | 8/194 | 1.8 | 47.6% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 12 (0.510) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
TGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGC > NC_002947/4647493‑4647785 | tGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGa < 1:509229/150‑1 (MQ=255) ccAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggc > 1:730607‑M1/1‑145 (MQ=255) gccgggccAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCCGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAg < 1:143183/150‑1 (MQ=255) cTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACAt < 2:6480/150‑1 (MQ=255) aCCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgta > 2:163695‑M1/1‑114 (MQ=255) cccGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtag > 1:420443‑M2/1‑143 (MQ=255) cTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagc < 1:163695‑M1/150‑42 (MQ=255) aTGCCGAGGCCCCGGCGCGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagcgg < 1:643777‑M1/150‑44 (MQ=255) aTGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagcgg < 2:730607‑M1/150‑44 (MQ=255) ccGAGGCCCCGGCGAGCAGTGCCGATGGCAGCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCTGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtt > 2:145781‑M2/1‑134 (MQ=255) aTCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCa > 1:770937/1‑150 (MQ=255) tCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgg < 2:383020‑M2/114‑14 (MQ=255) tCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgg > 1:383020‑M2/1‑101 (MQ=255) aagaGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTc < 2:770937/150‑1 (MQ=255) gagCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgt > 1:547566‑M1/1‑64 (MQ=255) gagCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgt < 2:547566‑M1/99‑36 (MQ=255) tAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtagga < 1:224263‑M1/90‑40 (MQ=255) tAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtagga > 2:224263‑M1/1‑51 (MQ=255) ttCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagag < 1:520518‑M2/103‑30 (MQ=255) ttCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATCGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagag > 2:520518‑M2/1‑74 (MQ=255) gCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTg > 2:640147/1‑150 (MQ=255) ctctTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggcgatcctgtaggagcgggtttacccgcgaagaggccggcacaggagaa > 2:520518‑M1/1‑29 (MQ=255) ctctTCGCGGGTAAACCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacaggagaa < 1:520518‑M1/103‑75 (MQ=255) gcgGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTc < 1:640147/150‑1 (MQ=255) cgGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGcttc < 2:103135/138‑1 (MQ=255) cgGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGcttc > 1:103135/1‑138 (MQ=255) tAAACCCGCTCCTGCAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCAc < 2:581926/140‑1 (MQ=255) tAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCAc > 1:581926/1‑140 (MQ=255) aaCCCGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttaccagcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgctgccatcggcactgctcgccggggcctcgg > 2:145781‑M1/1‑16 (MQ=255) ccGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttga < 2:383020‑M1/114‑102 (MQ=255) ccGCTCCTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttga > 1:383020‑M1/1‑13 (MQ=255) ccGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcat < 2:730607‑M2/150‑108 (MQ=255) ccGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgcgcgccggggcctcggcat < 1:643777‑M2/150‑108 (MQ=255) gCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcatag < 1:163695‑M2/150‑110 (MQ=255) tCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgctta < 1:224263‑M2/90‑52 (MQ=255) tCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgctta > 2:224263‑M2/1‑39 (MQ=255) cTACAGGggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcatagcggg > 1:420443‑M1/1‑7 (MQ=255) tACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcatagcgggt > 2:163695‑M2/1‑36 (MQ=255) aCAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctc < 2:547566‑M2/99‑65 (MQ=255) aCAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctc > 1:547566‑M2/1‑35 (MQ=255) | TGACCCAGGGCCGGGCCAGCTTCTCGATGGAGTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGC > NC_002947/4647493‑4647785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |