| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4647641 | 11 (0.330) | 9 (0.380) | 8/194 | 1.8 | 47.6% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
| ? | NC_002947 | = 4647671 | 12 (0.510) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
CCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGC > NC_002947/4647529‑4647818 | cccGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtag > 1:420443‑M2/1‑143 (MQ=255) ccGAGGCCCCGGCGAGCAGTGCCGATGGCAGCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCTGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtt > 2:145781‑M2/1‑134 (MQ=255) aTCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCa > 1:770937/1‑150 (MQ=255) tCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgg < 2:383020‑M2/114‑14 (MQ=255) tCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgg > 1:383020‑M2/1‑101 (MQ=255) aagaGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTc < 2:770937/150‑1 (MQ=255) ttCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagag < 1:520518‑M2/103‑30 (MQ=255) ttCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATCGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagag > 2:520518‑M2/1‑74 (MQ=255) gCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTg > 2:640147/1‑150 (MQ=255) gcgGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTc < 1:640147/150‑1 (MQ=255) cgGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGcttc > 1:103135/1‑138 (MQ=255) cgGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGcttc < 2:103135/138‑1 (MQ=255) tAAACCCGCTCCTGCAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCAc < 2:581926/140‑1 (MQ=255) tAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCAc > 1:581926/1‑140 (MQ=255) ccGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcat < 2:730607‑M2/150‑108 (MQ=255) ccGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgcgcgccggggcctcggcat < 1:643777‑M2/150‑108 (MQ=255) gCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcatag < 1:163695‑M2/150‑110 (MQ=255) tCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgctta < 1:224263‑M2/90‑52 (MQ=255) tCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgctta > 2:224263‑M2/1‑39 (MQ=255) tACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcatagcgggt > 2:163695‑M2/1‑36 (MQ=255) aCAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctc > 1:547566‑M2/1‑35 (MQ=255) aCAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctc < 2:547566‑M2/99‑65 (MQ=255) ggCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGc > 1:59359/1‑150 (MQ=255) cccAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACACATGCACCACGCGCAAATGCTTGCCCGcc > 1:77951/1‑150 (MQ=255) ttGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATa < 1:552211/150‑1 (MQ=255) gcCCCcctgtaggagcgggtttacccgcgaagaggccggcacaggagaaccgcttactccccgcggctcttcttgacgatgccatcggcaatgctcgccggggcctcggcatagcgggtgaactccatcgagaagctggcccggccctgg > 1:730607‑M2/1‑5 (MQ=255) cccccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTcgc > 2:668018/1‑150 (MQ=255) | CCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGC > NC_002947/4647529‑4647818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |