New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1114875 =	57 (0.720)	18 (0.280)	16/216	4.1	26.6%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114951 =	53 (0.820)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
Rejected: Coverage evenness skew score above cutoff.

AGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGG  >  NC_002947/1114728‑1115021                                                                                                                                                    |                                                                                                                                                     aGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACGCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCg                                                                                                                                                    >  2:1151917/1‑150 (MQ=255)   ggTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGac                                                                                                                                                  <  2:264012/150‑1 (MQ=255)    gTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGaca                                                                                                                                                 >  2:594638/1‑150 (MQ=255)               tCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTc                                                                                                                                      >  1:932775/1‑150 (MQ=255)                         gAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGcc                                                                                                                                          <  2:1171569/136‑1 (MQ=255)                         gAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGcc                                                                                                                                          >  1:1171569/1‑136 (MQ=255)                         gAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACaggagg                                                                                                                            <  2:1132276/150‑1 (MQ=255)                         gAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACACTGGTGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACaggagg                                                                                                                            >  1:122033/1‑150 (MQ=255)                              cGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGgc                                                                                                                       <  2:346763/150‑1 (MQ=255)                                    gACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGc                                                                                                                                           >  2:1361445/1‑124 (MQ=255)                                    gACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGc                                                                                                                                           <  1:1361445/124‑1 (MQ=255)                                           gtggCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTg                                                                                                        <  1:391946/150‑1 (MQ=255)                                           gtggCGGTTGCGCGGGTGCAGGGTGGGNTTGTTCGGGGTCNTGNCAGNGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAgggcg                                                                                                        >  1:1705945/1‑147 (MQ=255)                                                      gcgGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCtg                                                                                             >  2:1704918/1‑150 (MQ=255)                                                       cgGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCtgt                                                                                            <  1:1151917/150‑1 (MQ=255)                                                         ggTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTgg                                                                                          <  2:413973/150‑1 (MQ=255)                                                               gggtgggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTgg                                                                                          >  2:1246759/1‑144 (MQ=255)                                                               gggtgggtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTgg                                                                                          <  1:1246759/144‑1 (MQ=255)                                                                     gtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGc                                                                                   >  2:1992319/1‑145 (MQ=255)                                                                     gtTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGc                                                                                   <  1:1992319/145‑1 (MQ=255)                                                                              gggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTTAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGaaa                                                                     <  1:751759/150‑1 (MQ=255)                                                                                    tGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCg                                                               <  2:1062259/150‑1 (MQ=255)                                                                                    tGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCg                                                               >  1:6055/1‑150 (MQ=255)                                                                                              cAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTc                                                                           <  1:588801/128‑1 (MQ=255)                                                                                              cAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTc                                                                           >  2:588801/1‑128 (MQ=255)                                                                                              cAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCCTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGaa                                                                                                             >  1:1374886/1‑94 (MQ=255)                                                                                              cAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCCTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGaa                                                                                                             <  2:1374886/94‑1 (MQ=255)                                                                                               aGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGccc                                                    >  1:1179528/1‑150 (MQ=255)                                                                                                gCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTgg                                                                                          <  2:486644/111‑1 (MQ=255)                                                                                                gCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTgg                                                                                          >  1:486644/1‑111 (MQ=255)                                                                                                 cccTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAgg                                                                                                           <  2:1704346/93‑1 (MQ=255)                                                                                                 cccTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAgg                                                                                                           >  1:1704346/1‑93 (MQ=255)                                                                                                    tataCGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACg                                               >  1:1590701/1‑150 (MQ=255)                                                                                                         gAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTg                                                                                                        <  2:277306/88‑1 (MQ=255)                                                                                                         gAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTg                                                                                                        >  1:277306/1‑88 (MQ=255)                                                                                                         gAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGtctc                                          >  1:1627030/1‑150 (MQ=255)                                                                                                          aGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGtctct                                         >  1:1520302/1‑150 (MQ=255)                                                                                                           gCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGtctctc                                        <  1:591306/150‑1 (MQ=255)                                                                                                           gCGGTGGCTTGAAGACCCTGGGGATGATGCGCCGACCTTTTAGATCTACAGGCCCCTCCCACATGATTGTGTC‑G‑CCGTGAAGGTTGGCGCCGTCCTGTGCAAGCACCCTTGTGCTGCGAAAGGGTCGTACAGCGGCCCCAACGGtctctc                                        <  2:932775/150‑1 (MQ=255)                                                                                                                   ttGAAGACTCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCt                                                                                                                 <  2:638016/69‑1 (MQ=255)                                                                                                                   ttGAAGACTCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCt                                                                                                                 >  1:638016/1‑69 (MQ=255)                                                                                                                   ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACag                                                                                                                                <  2:157271/56‑1 (MQ=255)                                                                                                                   ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACag                                                                                                                                >  1:157271/1‑56 (MQ=255)                                                                                                                      gaGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACa                             >  1:975662/2‑150 (MQ=255)                                                                                                                      aaGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTCGGGATTACa                             >  1:1576735/1‑150 (MQ=255)                                                                                                                      aaGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACa                             <  2:1576735/150‑1 (MQ=255)                                                                                                                       aGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAg                            <  2:1520302/150‑1 (MQ=255)                                                                                                                       aGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAg                            <  2:1539400/150‑1 (MQ=255)                                                                                                                           ccTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCt                        >  1:28187/1‑150 (MQ=255)                                                                                                                           ccTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCt                        >  2:1358200/1‑150 (MQ=255)                                                                                                                           ccTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGAGCGGC‑G‑CCATGAAGGTTGACACGAACCGGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCt                        >  1:1734643/1‑150 (MQ=38)                                                                                                                                     ctgcGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAg                                                                    >  2:1096618/1‑96 (MQ=255)                                                                                                                                     ctgcGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAg                                                                    <  1:1096618/96‑1 (MQ=255)                                                                                                                                               cTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTc    >  2:445399/1‑150 (MQ=255)                                                                                                                                               cTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGAAATATAATGGCTGCACAGCGGCCCCAACGGTGTATATAGTGATTACAAGGCGGCAATGCTCGCATGCTGCTc    >  1:540906/1‑150 (MQ=255)                                                                                                                                                ttttGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAg                            >  1:1964620/1‑125 (MQ=255)                                                                                                                                                ttttGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAg                            <  2:1964620/125‑1 (MQ=255)                                                                                                                                                tttcGCGACACAAGGCCGCTCCCACAGGACGGCGCC‑AACCTTCAA‑GACGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg   >  2:374334/1‑150 (MQ=14)                                                                                                                                                 ttcgCGACACAAGGCCGCTCCCACAGGACGGCGCCAA‑CCTTCAAGG‑CGCCACCCTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCgg  >  1:1146486/4‑150 (MQ=11)                                                                                                                                                    |                                                                                                                                                     AGGGTGGGCCTTGATCAGGCTGGGGAAGTCGTAGCGACCCTGGTGGCGGTTGCGCGGGTGCAGGGTGGGTTTGTTCGGGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGC‑G‑CCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGG  >  NC_002947/1114728‑1115021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.