New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156328 =	37 (0.700)	13 (0.300)	10/224	3.5	29.1%	intergenic (+25/‑191)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156401 =	33 (0.760)					intergenic (+98/‑118)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
Rejected: Coverage evenness skew score above cutoff.

TATGGGCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGC  >  NC_002947/1156181‑1156476                                                                                                                                                    |                                                                                                                                                     tATGGGCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGcttct                                                                                                                                                    <  1:21000/150‑1 (MQ=255)      gCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTcgc                                                                                                                                                >  1:702035/1‑149 (MQ=255)      gCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTcgc                                                                                                                                                <  2:702035/149‑1 (MQ=255)             ttGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCGGCCGCGGGGTATGGGTTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAAc                                                                                                                                        <  2:558666/150‑1 (MQ=255)                ggCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTGGGCGGGGGAACACg                                                                                                                                     >  1:590588/1‑150 (MQ=255)                   aTTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTc                                                                                                                                  <  2:138010/150‑1 (MQ=255)                   aTTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTc                                                                                                                                  <  2:428570/150‑1 (MQ=255)                    ttGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTcc                                                                                                                                 <  1:1059128/150‑1 (MQ=255)                                            aTGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGcg                                                                                                         >  1:937442/1‑150 (MQ=255)                                                gggTGAGGTGAGCTTGCTGAACCTGCGGGAGGGTGGGCTGCGGGTGACCCTTTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCGTGGGTGGGCTTCTTCGCGGGTGAAACCGATCCTAAAAGGACCGAGTCAGGTTTGcgtcgt                                                                                                     <  2:463122/150‑1 (MQ=255)                                                 ggCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGGATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTTCTAGAGCGACCGAGTCACGTTTGGGTCGTa                                                                                                    <  2:342524/150‑1 (MQ=39)                                                    gAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTcgc                                                                                                                                                <  2:885080/103‑1 (MQ=255)                                                    gAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTcgc                                                                                                                                                >  1:885080/1‑103 (MQ=255)                                                      ggTGAGCTTGCTGAACCTGCGGGAGGGTGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTCCTCAGGTCAACCCGGTCCTACAGCGACCGAGTCAGGTTTGCGTCGTAGGAGc                                                                                               <  1:869719/150‑1 (MQ=255)                                                          aGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTTTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGt                                                                                           <  2:476908/150‑1 (MQ=255)                                                              tGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCAc                                                                                       <  2:639178/150‑1 (MQ=255)                                                              tGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCAc                                                                                       <  1:125497/150‑1 (MQ=255)                                                                     ccTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGaa                                                                                <  2:937442/150‑1 (MQ=255)                                                                          gggAGGGGGGGGTGCGGGTGGCCCTGTAGCTGCCGCGGGGTATGGATTGAGTTTGTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                           <  2:823138/150‑1 (MQ=38)                                                                          gggAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                           <  2:990675/150‑1 (MQ=255)                                                                                    gcTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCggg                                                                                                                                             >  2:417853/1‑74 (MQ=255)                                                                                    gcTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCggg                                                                                                                                             <  1:417853/74‑1 (MQ=255)                                                                                                ccTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCGCCTACCACGAGCGGGGCCGGGTGGCGTCGTAGTGGCGGGTTCACACGGGAAGGGGCACACACAGGCAGCCAAAATggc                                                     >  1:90853/1‑148 (MQ=25)                                                                                                 cTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAAcc                                                                                                                                       >  1:912600/1‑67 (MQ=255)                                                                                                 cTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAAcc                                                                                                                                       <  2:912600/67‑1 (MQ=255)                                                                                                 cTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCa                                                    >  2:454236/1‑150 (MQ=255)                                                                                                                ggTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAg                                                                                                                >  2:1141723/1‑75 (MQ=255)                                                                                                                ggTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAg                                                                                                                <  1:1141723/75‑1 (MQ=255)                                                                                                                        ttGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtcgt                             >  1:43676/1‑150 (MQ=255)                                                                                                                            gTTTTTGGGGTGCCTGTGCGGGCTTATTCGCGGGTGAACGCGCTCCTACAACGACCGAGTCAGGTTTATGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACATGCACCCAACATGTCACTGCCCAGTCATAATGCCGTCGTACtt                         >  1:629414/1‑150 (MQ=37)                                                                                                                               tttGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                      <  2:43676/150‑1 (MQ=255)                                                                                                                                        ccTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGc             <  1:454236/150‑1 (MQ=255)                                                                                                                                            tgCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAagag                                                                             >  2:793319/1‑82 (MQ=255)                                                                                                                                            tgCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAagag                                                                             <  1:793319/82‑1 (MQ=255)                                                                                                                                             gCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGGCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGa        <  2:574290/150‑1 (MQ=255)                                                                                                                                               gggCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGTGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGAcc      >  2:820442/1‑150 (MQ=255)                                                                                                                                                   ttcttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGc  >  1:229950/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TATGGGCTGGGGTTGGGCATTGCGCGCAACATCGCCCATAGCCATGGGGGCGAGGTGAGCTTGCTGAACCTGCGGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGC  >  NC_002947/1156181‑1156476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.