New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1156328 =	37 (0.700)	13 (0.300)	10/224	3.5	29.1%	intergenic (+25/‑191)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
	?	NC_002947	1156401 =	33 (0.760)					intergenic (+98/‑118)	PP_1013/yihS	sensor histidine kinase/aldose‑ketose isomerase
Rejected: Coverage evenness skew score above cutoff.

GGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAA  >  NC_002947/1156254‑1156544                                                                                                                                                    |                                                                                                                                                gggAGGGGGGGGTGCGGGTGGCCCTGTAGCTGCCGCGGGGTATGGATTGAGTTTGTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                                                               <  2:823138/150‑1 (MQ=38) gggAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGc                                                                                                                                               <  2:990675/150‑1 (MQ=255)                       ccTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCGCCTACCACGAGCGGGGCCGGGTGGCGTCGTAGTGGCGGGTTCACACGGGAAGGGGCACACACAGGCAGCCAAAATggc                                                                                                                         >  1:90853/1‑148 (MQ=25)                        cTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCa                                                                                                                        >  2:454236/1‑150 (MQ=255)                                               ttGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtcgt                                                                                                 >  1:43676/1‑150 (MQ=255)                                                   gTTTTTGGGGTGCCTGTGCGGGCTTATTCGCGGGTGAACGCGCTCCTACAACGACCGAGTCAGGTTTATGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACATGCACCCAACATGTCACTGCCCAGTCATAATGCCGTCGTACtt                                                                                             >  1:629414/1‑150 (MQ=37)                                                      tttGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                          <  2:43676/150‑1 (MQ=255)                                                               ccTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGc                                                                                 <  1:454236/150‑1 (MQ=255)                                                                   tgCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAagag                                                                                                                                                 >  2:793319/1‑82 (MQ=255)                                                                   tgCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAagag                                                                                                                                                 <  1:793319/82‑1 (MQ=255)                                                                    gCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGGCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGa                                                                            <  2:574290/150‑1 (MQ=255)                                                                      gggCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGTGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGAcc                                                                          >  2:820442/1‑150 (MQ=255)                                                                          ttcttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGc                                                                      >  1:229950/1‑150 (MQ=255)                                                                             ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGccc                                                                                                                                             <  2:157452/76‑1 (MQ=255)                                                                             ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGccc                                                                                                                                             >  1:157452/1‑76 (MQ=255)                                                                             ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAg                                                                                                                                       <  1:790907/82‑1 (MQ=255)                                                                             ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAg                                                                                                                                       >  2:790907/1‑82 (MQ=255)                                                                             ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAAt                                                                                                                            >  2:788441/1‑93 (MQ=255)                                                                             ttcGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAAt                                                                                                                            <  1:788441/93‑1 (MQ=255)                                                                             ttcGCGGGTGAACCCGCTCCTACAACGACCGAGCCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTgg                                                                   >  2:322078/1‑150 (MQ=255)                                                                                gcgTGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCTTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCTGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTa                                                                <  2:590588/150‑1 (MQ=255)                                                                                          ccGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAgg                                                                                                                                      <  2:954195/70‑1 (MQ=255)                                                                                          ccGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAgg                                                                                                                                      >  1:954195/1‑70 (MQ=255)                                                                                              tCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGa                                                  <  2:229950/150‑1 (MQ=255)                                                                                                cTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACt                                                >  1:1263874/1‑150 (MQ=255)                                                                                                cTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCcaaaaac                                                                                                                          <  2:1097125/76‑4 (MQ=17)                                                                                                cTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAAGCCCGCACAGGCACCCcaaaaac                                                                                                                          >  1:1097125/1‑73 (MQ=17)                                                                                                    aaCGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCTCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCa                                            >  1:670739/1‑150 (MQ=255)                                                                                                          cGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATc                                      >  1:1008869/1‑150 (MQ=255)                                                                                                          cGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATc                                      >  1:639551/1‑150 (MQ=255)                                                                                                            aGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtc                                                                                                   <  1:1059741/87‑1 (MQ=255)                                                                                                            aGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCcgtc                                                                                                   >  2:1059741/1‑87 (MQ=255)                                                                                                                      gCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCAt                          <  2:639551/150‑1 (MQ=255)                                                                                                                            tAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCAGCCAAAATGTCACTGCCCGGTGACAATCCATTCGTCCTTCGTGACATCCGCCATGACCCGGCTAGCTAAAATTCCCAAAGCCCTGCCAAGGATCAGCATGGCCAAT‑Accccc                   >  2:184556/1‑150 (MQ=25)                                                                                                                                 gCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCa               >  1:232409/1‑150 (MQ=255)                                                                                                                                        cACCCACGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTa        <  2:814773/150‑1 (MQ=255)                                                                                                                                         aCCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCGAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAt       >  1:809907/1‑150 (MQ=255)                                                                                                                                          cccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                          >  1:930505/1‑66 (MQ=255)                                                                                                                                          cccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGt                                                                                          <  2:930505/66‑1 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgt     >  1:639572/1‑150 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgt     >  2:1109691/1‑150 (MQ=255)                                                                                                                                           ccGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGGGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgt     >  2:934351/1‑150 (MQ=255)                                                                                                                                           acgagAAGAGGGTTGCAGAGGCGCCCAAAATGTCACTGCACGGTGACAATCGCTTCGTCCTTCGTGCCATCTGCGATGACCCCGCTGGCTAGAATTCGTAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTAtgt     <  2:629414/146‑1 (MQ=255)                                                                                                                                            cgcgAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAg                                   <  2:555909/119‑1 (MQ=255)                                                                                                                                            cgcgAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAg                                   >  1:555909/1‑119 (MQ=255)                                                                                                                                              cgAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGaa  <  1:322078/150‑1 (MQ=255)                                                                                                                                              cgAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGaa  <  2:232409/150‑1 (MQ=255)                                                                                                                                              cgAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGAGCGATCTGGCCCATGACCCCCCTCAACCTGTATGTGaa  >  1:395335/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                GGGAGGGCGGGCTGCGGGTGACCCTGTATCTGCCGCGGGGTATGGATTGAGTTTTTGGGGTGCCTGTGCGGGCTTCTTCGCGGGTGAACCCGCTCCTACAACGACCGAGTCAGGTTTGCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGCACCCAAAATGTCACTGCCCGGTGACAATCCCGTCGTCCTTCGTGACATCCGCCATGACCCCGCTGGCTAGAATTCGCAAACGACTGGCAAGGATCAAGCTGGCCCATGACCCCCCTCAACCTGTATGTGAA  >  NC_002947/1156254‑1156544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.