| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2050602 = | 15 (0.460) | 4 (0.170) | 4/192 | 3.0 | 25.1% | intergenic (‑52/+123) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947 | 2050712 = | 13 (0.550) | intergenic (‑162/+13) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
CGGTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGG > NC_002947/2050453‑2050751 | gttgtccagcatcctcaccgtggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaac > 2:644246‑M1/150‑150 (MQ=255) gTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCT > 2:599936‑M1/1‑150 (MQ=255) cagcatcctcaccgtggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGc < 2:581341‑M1/7‑1 (MQ=255) gcatcctcaccgtggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCgg > 2:653825‑M1/142‑150 (MQ=255) catcctcaccgtggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCggg < 1:379110‑M1/10‑1 (MQ=255) atcctcaccgtggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGc > 2:286878‑M1/140‑150 (MQ=255) cgtggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTcgc < 1:425881‑M1/19‑1 (MQ=255) cgtggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgaccagcaatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTcgc < 1:467094‑M1/19‑1 (MQ=255) tggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCgg > 2:425881‑M1/130‑150 (MQ=255) tggctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCgg > 2:259521‑M1/130‑150 (MQ=255) gACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGG < 1:599936‑M1/150‑1 (MQ=255) ctggcttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTg > 1:217111‑M1/127‑150 (MQ=255) ttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAAccc < 1:314119‑M1/29‑1 (MQ=255) ttgttgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAAccc < 1:166563‑M1/29‑1 (MQ=255) tgctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTc > 1:193040‑M1/118‑150 (MQ=255) ctgctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCt < 1:744445‑M1/35‑1 (MQ=255) gctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCgg > 1:348885‑M1/114‑134 (MQ=255) gctgtggctgggcgtgcgtttctggcggcgcagccgtatccgcttgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCgg < 2:348885‑M1/21‑1 (MQ=255) ttACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACag < 1:101044/150‑1 (MQ=255) cgcACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGaa < 2:368861/150‑1 (MQ=255) ttCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTca < 1:760788/134‑1 (MQ=255) ttCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTca > 2:760788/1‑134 (MQ=255) tCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGAcggc < 2:264487/150‑1 (MQ=255) cTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGt < 1:514911/150‑1 (MQ=255) ttGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACgggg > 1:218908/1‑121 (MQ=255) ttGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACgggg < 2:218908/121‑1 (MQ=255) gAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGcc > 2:495730/1‑150 (MQ=255) ggAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCGCCTACGGGGATGTCCCAGAGACCGAAAACGGGGGAGGTGcgatagg > 1:245875/1‑144 (MQ=38) tgcgccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGc > 2:744445‑M1/70‑150 (MQ=255) aaTCGTCGTCTTGAATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgg > 1:292805‑M2/1‑140 (MQ=255) gccgcgggcgggagcttaacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCggg > 1:719048‑M1/67‑150 (MQ=255) aTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcggg > 1:324979‑M2/1‑139 (MQ=255) gtcgtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagc > 2:203997‑M2/1‑136 (MQ=255) gtcgtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagc < 1:203997‑M2/144‑9 (MQ=255) cgtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgggttcac > 1:495730‑M2/1‑134 (MQ=255) gtcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgggttcacc < 1:797979‑M2/150‑18 (MQ=255) tcTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCAGAAGATGGCGG‑GGTGCCTgtaggagcgggttcaccc < 1:336094‑M2/150‑19 (MQ=255) ttGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGAGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgggttcacccgc < 1:227793‑M2/150‑21 (MQ=255) atgatgCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgg > 1:208059‑M1/1‑90 (MQ=255) atgatgCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgg < 2:208059‑M1/136‑47 (MQ=255) gatgCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgggttcacccgcgaagag < 2:762899‑M2/150‑27 (MQ=255) aacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCgg > 1:452390‑M1/50‑132 (MQ=255) aacctgtcgccgcacctgatgaagaagcacgattgatggttttgcgtaaCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCgg < 2:452390‑M1/83‑1 (MQ=255) gCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgggttcacccgcgaagaggcc > 1:762899‑M2/1‑121 (MQ=255) cTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtag > 1:525096‑M1/1‑83 (MQ=255) cTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtag < 2:525096‑M1/123‑41 (MQ=255) cggcgTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACg < 2:797979/150‑1 (MQ=255) tAGTTTACGCGACTGTGAGGCCGGGTGCATTTTCTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTAACCGAGCCCGAATACGGCGG‑GGTGCCTGTATGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCaaaa < 1:249697/150‑1 (MQ=255) gACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgggttcacccgcgaa < 2:153643‑M2/116‑24 (MQ=255) gACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTgtaggagcgggttcacccgcgaa > 1:153643‑M2/1‑93 (MQ=255) tgtgGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGGACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGc > 2:166563/1‑150 (MQ=255) ggTGTGCAGCCTGTGGGGGGCGCTTCGCGGGTGAGCCCCCTACTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCGGGTTCGCGCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTtcat < 2:227793/150‑1 (MQ=255) gtgCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGCGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCGGGATCACGCGCGAAGAGGCCCGAACAGGCTACGCAAAACCAACAATCGAGCTACATCATCAg > 2:318927/1‑150 (MQ=38) CCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTgcgg < 2:462317‑M1/150‑1 (MQ=255) | CGGTCGGCCTTGGGCTTGCCGACTTCGGCACGGTCGTGGCGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGG‑GGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGG > NC_002947/2050453‑2050751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |