New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2050602 =	15 (0.460)	4 (0.170)	4/192	3.0	25.1%	intergenic (‑52/+123)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	2050712 =	13 (0.550)					intergenic (‑162/+13)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

CGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAAC  >  NC_002947/2050567‑2050860                                                                                                                                                  |                                                                                                                                                      cggcgTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACg                                                                                                                                                   <  2:797979/150‑1 (MQ=255)      tAGTTTACGCGACTGTGAGGCCGGGTGCATTTTCTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTAACCGAGCCCGAATACGGCGGGGTGCCTGTATGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCaaaa                                                                                                                                              <  1:249697/150‑1 (MQ=255)                   tgtgGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGGACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGc                                                                                                                                 >  2:166563/1‑150 (MQ=255)                           ggTGTGCAGCCTGTGGGGGGCGCTTCGCGGGTGAGCCCCCTACTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCGCGCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTtcat                                                                                                                         <  2:227793/150‑1 (MQ=255)                              gtgCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGCGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGATCACGCGCGAAGAGGCCCGAACAGGCTACGCAAAACCAACAATCGAGCTACATCATCAg                                                                                                                      >  2:318927/1‑150 (MQ=38)                                    CCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTgcgg                                                                                                                <  2:462317‑M1/150‑1 (MQ=255)                                            GGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGt                                                                                                        >  1:462317‑M1/1‑150 (MQ=255)                                             GCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGtt                                                                                                       <  2:314119‑M1/150‑1 (MQ=255)                                               CTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTaa                                                                                                     <  1:490832‑M1/150‑1 (MQ=255)                                               CTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGAGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTaa                                                                                                     >  1:351468‑M1/1‑150 (MQ=255)                                                TCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAg                                                                                                    <  1:190036‑M1/150‑1 (MQ=255)                                                TCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAg                                                                                                    >  1:318927‑M1/1‑150 (MQ=255)                                                   TCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTc                                                                                                 >  2:190036‑M1/1‑150 (MQ=255)                                                              cccgctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggc                                                                                      >  1:719048‑M2/85‑150 (MQ=255)                                                               ccgctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGtt                                                                                                       >  1:452390‑M2/84‑132 (MQ=255)                                                               ccgctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGtt                                                                                                       <  2:452390‑M2/49‑1 (MQ=255)                                                               CCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggcg                                                                                     <  2:64251‑M1/150‑1 (MQ=255)                                                               CCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggcg                                                                                     <  2:379110‑M1/150‑1 (MQ=255)                                                               CCGCTCCTACGGAGATGTCACAGAGCCCGAAGACGGCGGGAAGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggcg                                                                                     <  2:169018‑M1/150‑1 (MQ=255)                                                                 gctcctacaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCa                                                                                   >  2:744445‑M2/82‑150 (MQ=255)                                                                     CTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCg                                                                               <  1:110976‑M1/150‑1 (MQ=255)                                                                              tGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCt                                                                     <  1:64251/150‑1 (MQ=255)                                                                                 cacaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTgcg                                                                  >  1:537129/1‑150 (MQ=255)                                                                                  acaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAgg                                                                                                         >  2:34935/1‑111 (MQ=255)                                                                                  acaGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAgg                                                                                                         <  1:34935/111‑1 (MQ=255)                                                                                         ccGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACTGCTGCGCCGCCAGa                                                          >  1:170118/1‑150 (MQ=255)                                                                                         ccGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGATCCGCGTCCAGa                                                          >  2:467094/1‑150 (MQ=255)                                                                                                      ggTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAg                                             <  2:537129/150‑1 (MQ=255)                                                                                                           cTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCcaca                                        >  1:581341/1‑150 (MQ=255)                                                                                                               aggagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAcagcag                                    <  1:744445‑M2/115‑1 (MQ=255)                                                                                                                 gagcgggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAgcagca                                  >  1:193040‑M2/34‑150 (MQ=255)                                                                                                                     gggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGcaacaa                              <  1:314119‑M2/121‑1 (MQ=255)                                                                                                                     gggttcacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGcaacaa                              <  1:166563‑M2/121‑1 (MQ=255)                                                                                                                     gggTTCTGCCGCGAAGCGGCCCGCACAGGTTACGCAAACCCATCAATCGTTCTTCTTCATCAGGTGCGGCGAGAGGTTAAGCTCCCGCCCGCCGCGCAAGCGCG‑TACGGCTGGGCCACCAGAAACGCGCGCCCAGGCACAGCGGcaacaa                              <  2:245875/150‑1 (MQ=255)                                                                                                                          cacccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAagccag                         >  1:217111‑M2/25‑150 (MQ=255)                                                                                                                             ccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAcagc                                      <  2:348885‑M2/113‑1 (MQ=255)                                                                                                                             ccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCAcagc                                      >  1:348885‑M2/22‑134 (MQ=255)                                                                                                                             ccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAgccagcca                      >  2:259521‑M2/22‑150 (MQ=255)                                                                                                                             ccgcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAgccagcca                      >  2:425881‑M2/22‑150 (MQ=255)                                                                                                                               gcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGATTGCTGGT‑CGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACg                    <  1:467094‑M2/131‑1 (MQ=255)                                                                                                                               gcgaagaggcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACg                    <  1:425881‑M2/131‑1 (MQ=255)                                                                                                                                       gcccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGAt            >  2:286878‑M2/12‑150 (MQ=255)                                                                                                                                        cccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATg           <  1:379110‑M2/140‑1 (MQ=255)                                                                                                                                         ccgcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGc          >  2:653825‑M2/10‑150 (MQ=255)                                                                                                                                           gcacaggTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTg        <  2:581341‑M2/143‑1 (MQ=255)                                                                                                                                                 gTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAAc  >  2:644246‑M2/2‑150 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA‑TACGGCTGCGCCGCCAGAAACGCACGCCCAGCCACAGCAGCAACAAGCCAGCCACGGTGAGGATGCTGGACAAC  >  NC_002947/2050567‑2050860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.