New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	358055 =	35 (0.700)	6 (0.160)	10/202	2.7	25.9%	intergenic (+20/‑110)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein
	?	NC_002947	358133 =	8 (0.210)					intergenic (+98/‑32)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein

CCCACACTGATCGCGACATCCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/358231‑358055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtaggagcgggcttgcccgcgaagaggcccTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGTCGCTTCTGGGAAACCCATGCGGCGC  >  NC_002947/358133‑358281                                                                                                                                                                                                                                                                                                                                        CCCACACTGATCGCGACATCCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATCTTCCGTTGTGTTGCACCTTCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTA                                                                                                                                                                                  <  1:709336/150‑1      ACTGATCGCGACATCCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGC                                                                                                                                                                             <  1:1046750/150‑1        TGATCGCGACATCCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGG                                                                                                                                                                           <  2:707069/150‑1            CGCGACATCCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTT                                                                                                                                                                       <  2:574905/150‑1              gatctTCCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGACCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGC                                                                                                                                                                     <  1:291845/145‑1                    CCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTACCTGTACGTACGGGCTTGCCagatc                                                                                                                                                               >  2:291845/1‑145                              GTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGC                                                                                                                                                                             >  2:704537/1‑126                              GTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGC                                                                                                                                                                             <  1:704537/126‑1                                 GGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGC                                                                                                                                                                     <  1:942504/131‑1                                 GGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGC                                                                                                                                                                     <  1:63706/131‑1                                 GGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGC                                                                                                                                                                     >  2:63706/1‑131                                 GGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGC                                                                                                                                                                     >  2:942504/1‑131                                  GCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCT                                                                                                                                                                                     >  1:554018/1‑114                                  GCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCT                                                                                                                                                                                     <  2:554018/114‑1                                         GCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCT                                                                                                                                                                                     >  1:424172/1‑107                                         GCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCT                                                                                                                                                                                     <  2:424172/107‑1                                             ATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGC                                                                                                                                                                             <  2:781804/111‑1                                             ATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGC                                                                                                                                                                             >  1:781804/1‑111                                                 CCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGC                                                                                                                                                         >  2:1134534/1‑127                                                 CCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGC                                                                                                                                                         <  1:1134534/127‑1                                                                                           CAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTC                                                                                                                                                                                       <  2:758501/55‑1                                                                                           CAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTC                                                                                                                                                                                       >  1:758501/1‑55                                                                                                  gAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGG                                                                                                                                                          >  2:870588/2‑77                                                                                                  AAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGG                                                                                                                                                          <  1:870588/77‑1                                                                                                                    AAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAG                                                                                                                                                           <  2:409979/58‑1                                                                                                                    AAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAG                                                                                                                                                           >  1:409979/1‑58                                                                                                                           CTCCTACAGGGATTGCACAGTTCCTGTTGATGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTG                                                        >  1:33035/1‑150                                                                                                                              CTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTAT                                                                                                                     >  2:731663/1‑86                                                                                                                              CTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTAT                                                                                                                     <  1:731663/86‑1                                                                                                                               TACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGG                                                    >  2:161077/1‑150                                                                                                                                    GGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTG                                               >  2:81204/1‑150                                                                                                                                        TGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGG                                           <  1:161077/150‑1                                                                                                                                                 CCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTA                                  >  1:743989/1‑150                                                                                                                                                    ctcttcGCGGGCAAGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGTGTTGTCGGTGACACTTAAAG                               >  2:414978/7‑150                                                                                                                                                     TAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGA                                                                      <  1:735229/110‑1                                                                                                                                                     TAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGA                                                                      >  2:735229/1‑110                                                                                                                                                        GAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGT                           <  2:1046750/150‑1                                                                                                                                                                TTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGTCGCTTCTG                   <  1:81204/150‑1                                                                                                                                                                 TGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGTCGCTTCTGG                  <  2:1176159/150‑1                                                                                                                                                                            AGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGTCGCTTCTGGGAAACCCATGC       >  2:896582/1‑150                                                                                                                                                                              GCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGGTGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGTCGCTTCTGGGAAACCAATGCGG     >  1:494257/1‑150                                                                                                                                                                                 CTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGTCGCTTCTGGGAAACCCATGCGGCGC  <  1:896582/150‑1                                                                                                                                                                                 CTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCG                                            >  2:5863/1‑108                                                                                                                                                                                 CTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCG                                            <  1:5863/108‑1                                                                                                                                                                                 CTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGG                                                     <  2:900274/99‑1                                                                                                                                                                                 CTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGG                                                     >  1:900274/1‑99                                                                                                                                                                                                                                                                                                                                        CCCACACTGATCGCGACATCCGACGATCGGTAGGCGGGGCGCCCATCACCGCACCATAAAGAGGCATAGGCGGTTGTGTTGCACCTGCATCAGCCTCAAGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGGATTGCACAGTTCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/358231‑358055 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtaggagcgggcttgcccgcgaagaggcccTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTGTCGGTGACACTTAAAGGTGTCGCTTCTGGGAAACCCATGCGGCGC  >  NC_002947/358133‑358281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.