| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 358055 = | 35 (0.700) | 6 (0.160) | 10/202 | 2.7 | 25.9% | intergenic (+20/‑110) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein |
| ? | NC_002947 | 358133 = | 8 (0.210) | intergenic (+98/‑32) | tdcG‑I/PP_5441 | L‑serine dehydratase/hypothetical protein | |||||
CGGCGATGGTGAGCACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGC > NC_002947/357906‑358193 | gcgccgcatgggtttcccagaagcgacacctttaagtgtcaccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaag < 1:896582‑M1/1‑1 (MQ=255) ggcgATGGTGAGCACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTgg < 2:392686/150‑1 (MQ=255) ccgcattggtttcccagaagcgacacctttaagtgtcaccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccaccaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGc > 1:494257‑M1/147‑150 (MQ=255) gcatgggtttcccagaagcgacacctttaagtgtcaccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCct > 2:896582‑M1/145‑150 (MQ=255) tGAGCACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTc > 2:1191475/1‑150 (MQ=255) gCACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTcgcg < 2:1064530/150‑1 (MQ=255) cACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCgg < 2:594939/150‑1 (MQ=255) cACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCCAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCgg < 2:532884/150‑1 (MQ=255) cTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGc > 2:926773/1‑150 (MQ=255) ttCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTcgcg > 2:174881/1‑146 (MQ=255) ttCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTcgcg < 1:174881/146‑1 (MQ=255) ccagaagcgacacctttaagtgtcaccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCa < 2:1176159‑M1/17‑1 (MQ=255) cagaagcgacacctttaagtgtcaccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCaa < 1:81204‑M1/18‑1 (MQ=255) aTTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGc < 1:135487/150‑1 (MQ=255) cccTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGc > 1:688626/1‑150 (MQ=255) cTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGGTATGGACGAGAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGCGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCtt < 1:475846/150‑2 (MQ=255) acacctttaagtgtcaccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTc < 2:1046750‑M1/26‑1 (MQ=255) ctttaagtgtcaccgacaacacccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCTtgcccgcgaagag > 2:414978‑M1/121‑144 (MQ=255) aCCAGCTAATGCACACCATGCGTGACATCGGTGCCGATATGGACGTCAAGTACAAGGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTTAGCCGACCTTCTCGGCCTCTTCGCGGGCAAGCCTGGTCCTAc < 2:434555/150‑1 (MQ=255) taagtgtcaccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAgg > 1:743989‑M1/118‑150 (MQ=255) tCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAgggattgc > 2:1125079/1‑144 (MQ=255) ccGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACtgtg < 1:328612/150‑1 (MQ=255) ccGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGAACAGCGCTTTCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACtgtg < 2:43003/150‑1 (MQ=255) cGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGc > 2:575364/1‑150 (MQ=255) ccgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCa < 1:161077‑M1/42‑1 (MQ=255) cgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaag > 2:5863‑M1/108‑108 (MQ=255) cgacaacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaag < 1:5863‑M1/1‑1 (MQ=255) ccATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATc < 2:724042/150‑1 (MQ=255) caacgcccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATcc > 2:81204‑M1/105‑150 (MQ=255) tGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCt < 1:1191475/150‑1 (MQ=255) tGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCt > 1:730440/1‑150 (MQ=255) gcgATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTa < 1:926773/150‑1 (MQ=255) cccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTa > 2:161077‑M1/100‑150 (MQ=255) ccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaag < 2:900274‑M1/1‑1 (MQ=255) ccacactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaag > 1:900274‑M1/99‑99 (MQ=255) aTACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGa < 1:695369/150‑1 (MQ=255) cactgatcgcgacatccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCATCAACAGGAACTGTGCAATCCCTGTAGGAg > 1:33035‑M1/96‑150 (MQ=255) gcCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCtt < 1:575364/150‑1 (MQ=255) gATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGaa > 1:1199644/1‑120 (MQ=255) gATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGaa < 2:1199644/120‑1 (MQ=255) tccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTa < 1:735229‑M1/29‑1 (MQ=255) tccgacgatcggtaggcggggcgcccatcaccgcaccataaagaggcataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTa > 2:735229‑M1/82‑110 (MQ=255) gCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTa < 1:757667/131‑1 (MQ=255) gCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTa > 2:757667/1‑131 (MQ=255) gACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAagag < 1:1255138/150‑1 (MQ=255) aCAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACCGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAgg < 2:730440/150‑1 (MQ=255) aaaGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAg > 1:489138/1‑150 (MQ=255) gaCCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGGAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGa < 2:489138/150‑1 (MQ=255) tCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAg > 1:1257437/1‑90 (MQ=255) tCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAg < 2:1257437/90‑1 (MQ=255) ataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAg < 1:731663‑M1/52‑1 (MQ=255) ataggcggttgtgttgcacctgcatcagcctcaaGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAg > 2:731663‑M1/35‑86 (MQ=255) tATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCt < 2:1096538/80‑1 (MQ=255) tATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCt > 1:1096538/1‑80 (MQ=255) gCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGgcgc > 1:991396/1‑150 (MQ=255) | CGGCGATGGTGAGCACTTCATTTCCCTCGACCAGGTAATCCGCACCATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGC > NC_002947/357906‑358193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |