New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1194573 =	13 (0.800)	3 (0.190)	3/250	NT	18.9%	coding (706/1653 nt)	uxpA	lipoprotein UxpA
	?	NC_002947	1194616 =	13 (0.820)					coding (749/1653 nt)	uxpA	lipoprotein UxpA

CCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1194722‑1194573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTC  >  NC_002947/1194616‑1194711                                                                                                                                                                                                                                                        CCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTG                                                                                                  >  2:69183/1‑150                                                                                                 CACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTAACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGACCCGGCCTGTGGCTGGCTGAACGGGGGCCGGAAATCGACGTGCTGTCGTGGGCGCGTGGTa  >  2:168816/1‑149                                                                                                    CACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTG     <  1:256334/144‑1                                                                                                    CACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTGACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTG     >  2:256334/1‑144                                                                                                                                                                                                                                                        CCACAGGTCCTGACCACGGGCGCACAACAGCACGTCGATTTGCGGCACCCGTTCAGCCAGCCACAGGCCGGGGCCCGTGCCTGCATCGGCCATGGCCACCACCAGGTCAGCCTCGTGCCGGGCTTGCTCGAATACCGGCAGCAGAGACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1194722‑1194573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgACCTGGTGGTGGCCATGGCCGATGCAGGCACGGGCCCCGGCCTGTGGCTGGCTGAACGGGTGCCGCAAATCGACGTGCTGTTGTGCGCCCGTGGTC  >  NC_002947/1194616‑1194711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.