New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1965064 =	12 (0.740)	3 (0.190)	3/246	NT	19.7%	coding (1233/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase
	?	NC_002947	1965122 =	13 (0.840)					coding (1291/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase

GTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1965136‑1965064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG  >  NC_002947/1965122‑1965266                                                                                                                                                                                                                            GTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCG                                                                      >  1:44243/1‑150                  AATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGC                                                                       <  1:11155/132‑1                  AATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGC                                                                       >  2:11155/1‑132                                                                     ATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG  >  1:422485/1‑150                                                                                                                                                                                                                            GTCGAGGAACATCAGCGAATGCCGCCCGGCCTGGCGCGCCAGGTCGTTGAGCGCCTGCTCCAGGCGGTATTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1965136‑1965064 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTTGCTGCGGCACATCTGCGCGGTGCTGCAATCCGGCCTGCGTGAGGGCGATACGCTGGCGCGGCTGGGCGGCGATG  >  NC_002947/1965122‑1965266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.