New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1965064 =	12 (0.740)	3 (0.190)	3/246	NT	19.7%	coding (1233/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase
	?	NC_002947	1965122 =	13 (0.840)					coding (1291/2526 nt)	yegE	phosphodiesterase domain‑containing diguanylate cyclase

TAGGCTCGCCGATCCTCAATGATGGCCAGGTCAGTGGCATCGTACTGGTGCTGCACGACATGACCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTT  >  NC_002947/1964919‑1965192                                                                                                                                                  |                                                                                                                                 catcgccgcccagccgcgccagcgtatcgccctcacgcaggccggattgcagcaccgcgcagatgtgccgcagcaactcatcgccggcagcgtggccacaggtgtcgttgaccagcttgaactggtcgaggtcgaggaacatcagCGAAt                                                                                                                              >  1:422485‑M1/146‑150 (MQ=255)        gCCGATCCTCAATGATGGCCAGGTCAGTGGCATCGTACTGGTGCTGCACGACATGACCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGAAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCt                                                                                                                       >  1:267969/1‑150 (MQ=255)                tCAATGATGGCCAGGTCAGTGGCATCGTACTGGTGCTGCACGACATGACCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAg                                                                                                                >  1:438056/1‑149 (MQ=255)                tCAATGATGGCCAGGTCAGTGGCATCGTACTGGTGCTGCACGACATGACCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAg                                                                                                                <  2:438056/149‑1 (MQ=255)                                                               aCCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTc                                                                <  1:139292/150‑1 (MQ=255)                                                                 ccAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGAt                                                                    <  1:344933/144‑1 (MQ=255)                                                                 ccAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGAt                                                                    >  2:344933/1‑144 (MQ=255)                                                                 ccAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTcct                                                              >  1:214972/1‑150 (MQ=255)                                                                     gAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTcctcgac                                                          <  1:116835/150‑1 (MQ=255)                                                                     cgcagcaactcatcgccggcagcgtggccacaggtgtcgttgaccagcttgaactggtcgaggtcgaggaacatcagCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTcctcgac                                                          >  1:44243‑M1/78‑150 (MQ=255)                                                                      gcagcaactcatcgccggcagcgtggccacaggtgtcgttgaccagcttgaactggtcgaggtcgaggaacatcagCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCAtt                                                                           <  1:11155‑M1/56‑1 (MQ=255)                                                                      gcagcaactcatcgccggcagcgtggccacaggtgtcgttgaccagcttgaactggtcgaggtcgaggaacatcagCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCAtt                                                                           >  2:11155‑M1/77‑132 (MQ=255)                                                                          ccAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACTGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCTCTGATGTTcctcgacctcga                                                     <  2:163641/150‑1 (MQ=255)                                                                                      cAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCt                                         >  1:347541/1‑150 (MQ=255)                                                                                               cTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGa                                >  2:421178/1‑150 (MQ=255)                                                                                                                             gCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGtt  <  2:267969/150‑1 (MQ=255)                                                                                                                                                ttCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGTCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGa        >  1:407815/1‑125 (MQ=255)                                                                                                                                                ttCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGTCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGa        <  2:407815/125‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                 TAGGCTCGCCGATCCTCAATGATGGCCAGGTCAGTGGCATCGTACTGGTGCTGCACGACATGACCCAGGAACGCCAGTACATCGCCAACCTGTCCTGGCAAGCAACCCACGATGCGCTGACCGGGCTGGCCAACCGCCGCGAGTTCGAATACCGCCTGGAGCAGGCGCTCAACGACCTGGCGCGCCAGGCCGGGCGGCATTCGCTGATGTTCCTCGACCTCGACCAGTTCAAGCTGGTCAACGACACCTGTGGCCACGCTGCCGGCGATGAGTT  >  NC_002947/1964919‑1965192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.