New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6174834 =	29 (1.790)	4 (0.260)	4/248	NT	13.1%	coding (399/420 nt)	atpC	ATP synthase subunit epsilon
	?	NC_002947	6174870 =	25 (1.590)					coding (363/420 nt)	atpC	ATP synthase subunit epsilon

CGTGCAACGTGCTGCAGACCTGGATGAAGCTCAGGCTCAGGAGGCCCTCAAGGCTGCCGAGAACGCCCTGAATCTGAAAGGCGCGGACTTCGACTACGGCGCCGCCGCCGCACGTCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6174984‑6174834 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGA  >  NC_002947/6174870‑6174912                                                                                                                                                                                                    CGTGCAACGTGCTGCAGACCTGGATGAAGCTCAGGCTCAGGAGGCCCTCAAGGCTGCCGAGAACGCCCTGAATCTGAAAGGCGCGGACTTCGACTACGGCGCCGCCGCCGCACGTCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCA                                              <  1:17206/150‑1                                                         CCGAGAACGCCCTGAATCTGAAAGGCGCGGACTTCGACTACGGCGCCGCCGCCGCACGTCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCA                                              <  1:113892/94‑1                                                         CCGAGAACGCCCTGAATCTGAAAGGCGCGGACTTCGACTACGGCGCCGCCGCCGCACGTCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCA                                              >  2:113892/1‑94                                                                                                           GCCGCACGTCTGGCCGAGGCCGCAGCCCAGCTGCGTCCCTGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGA  <  1:234930/88‑1                                                                                                           GCCGCACGTCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGA  >  2:234930/1‑88                                                                                                                            GGCCGCAGCCCAGCTGCGTACCGTCCAGACGTGCGGCGGCGGCGCCG                          >  1:301510/1‑47                                                                                                                            GGCCGCAGCCCAGCTGCGTACCGTCCAGACGTGCGGCGGCGGCGCCG                          <  2:301510/47‑1                                                                                                                                                                                                    CGTGCAACGTGCTGCAGACCTGGATGAAGCTCAGGCTCAGGAGGCCCTCAAGGCTGCCGAGAACGCCCTGAATCTGAAAGGCGCGGACTTCGACTACGGCGCCGCCGCCGCACGTCTGGCCGAGGCCGCAGCCCAGCTGCGTACCGTCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6174984‑6174834 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGA  >  NC_002947/6174870‑6174912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.