New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6174834 =	29 (1.790)	4 (0.260)	4/248	NT	13.1%	coding (399/420 nt)	atpC	ATP synthase subunit epsilon
	?	NC_002947	6174870 =	25 (1.590)					coding (363/420 nt)	atpC	ATP synthase subunit epsilon

TACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAGG  >  NC_002947/6174702‑6174966                                                                                                                                     |                                                                                                                                     tACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTg                                                                                                                     >  2:98803/1‑150 (MQ=255)         cTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCgg                                                                                                             >  2:408987/1‑150 (MQ=255)                     tGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGAc                                                                                                 >  2:394039/1‑150 (MQ=255)                     tGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGATACTCTTTTACTCAATCGCAACAGAAGTTATCAGCAGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCATCGGCCAGAc                                                                                                 >  1:214453/1‑150 (MQ=255)                      gAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGACAATACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACg                                                                                                >  1:189351/1‑150 (MQ=255)                               ggggAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTgcggcggc                                                                                       >  2:316082/1‑150 (MQ=255)                                                             ccGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAACCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAg                                                         >  1:423814/1‑150 (MQ=255)                                                              cGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGa                                                        <  1:380422/150‑1 (MQ=255)                                                              cGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGa                                                        >  2:380422/1‑150 (MQ=255)                                                                    tACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAgg                                                  <  1:98803/150‑1 (MQ=255)                                                                    tACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAgg                                                  <  2:189351/150‑1 (MQ=255)                                                                              cTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGTCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCgg                                        <  2:337172/150‑1 (MQ=255)                                                                               tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAg                                                         <  1:35036/132‑1 (MQ=255)                                                                               tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAg                                                         >  2:35036/1‑132 (MQ=255)                                                                               tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGc                                       >  2:372424/1‑150 (MQ=255)                                                                               tCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCCCGGc                                       >  1:285491/1‑150 (MQ=255)                                                                                 aaTCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAg                                     >  2:386195/1‑150 (MQ=255)                                                                                 aaTCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAg                                     >  1:55807/1‑150 (MQ=255)                                                                                  aTCGCAACAGAAGTCATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGc                                    >  1:320704/1‑150 (MQ=255)                                                                                     gCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCtt                                 >  1:174234/1‑150 (MQ=255)                                                                                          tctgaaaggcgcggacttcgactacggcgccgccgccgcacgtCTGGCAGGGACGCAGCTGGGCTGCGGCCTCGGCCAGACGTgcggc                                                                                          <  1:234930‑M1/45‑1 (MQ=255)                                                                                          tctgaaaggcgcggacttcgactacggcgccgccgccgcacgtCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTgcggc                                                                                          >  2:234930‑M1/44‑88 (MQ=255)                                                                                           gAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGc                           <  1:161172/150‑1 (MQ=255)                                                                                                    aGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagc                  <  2:174234/150‑1 (MQ=255)                                                                                                        ggggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagcctga              <  1:386195/150‑1 (MQ=255)                                                                                                        ggggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagcctga              <  2:423814/150‑1 (MQ=255)                                                                                                         gggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTcctgagcctgag             <  1:408987/150‑1 (MQ=255)                                                                                                          ggCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCctgagcctgagc            <  2:417959/150‑1 (MQ=255)                                                                                                             cGATTACTTGCCTTTCCCCCTTTACTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTc         <  2:214453/150‑1 (MQ=255)                                                                                                                  cggcgccgccgccgcacgtCTGGACGGTACGCAGCTGGGCTGCGGcc                                                                                                           <  2:301510‑M1/28‑1 (MQ=255)                                                                                                                  cggcgccgccgccgcacgtCTGGACGGTACGCAGCTGGGCTGCGGcc                                                                                                           >  1:301510‑M1/20‑47 (MQ=255)                                                                                                                   cTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAg   <  1:316082/150‑1 (MQ=255)                                                                                                                    ttGGCTTTGCGCATTTGCTGCACGGTAGGCAGCTGGGCTGCGGCCTCGGCCAGCCGTGCTGCGGCGGCCCCGCAGTCGAAGTCCGCGCCTTTCAGAATCACGGCGTTATCGGCAGCCTGTAGGGCCGCCTGAGCCTGAGCTTCATTCAgg  >  2:137409/1‑150 (MQ=255)                                                                                                                                     |                                                                                                                                     TACCAATCCTGGGCGGTCAGTGAAAGACCGGGGGAGAAAACAGAAAAAGAAAAAGGGTAGCCGAGGCTACCCTTTTACTCAATCGCAACAGAAGTTATCAGCCGGGGCCGATTACTTGCCTTTGCGCATTTGCTGGACGGTACGCAGCTGGGCTGCGGCCTCGGCCAGACGTGCGGCGGCGGCGCCGTAGTCGAAGTCCGCGCCTTTCAGATTCAGGGCGTTCTCGGCAGCCTTGAGGGCCTCCTGAGCCTGAGCTTCATCCAGG  >  NC_002947/6174702‑6174966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.