New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 219919	24 (1.480)	4 (0.260)	4/248	NT	14.0%	coding (25425/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 219942	26 (1.660)					coding (25448/26049 nt)	PP_0168	putative surface adhesion protein

CCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGG  >  NC_002947/219776‑220056                                                                                                                                                |                                                                                                                                          ccACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAg                                                                                                                                     <  2:248076/150‑1 (MQ=255)   acaGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAggg                                                                                                                                   >  1:289794/1‑150 (MQ=255)         cAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCa                                                                                                                             >  2:432810/1‑150 (MQ=255)                      tCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAg                                                                                                                                     >  2:342499/1‑129 (MQ=255)                      tCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAg                                                                                                                                     <  1:342499/129‑1 (MQ=255)                                ccAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacgacacc                                                                                                           <  2:362811‑M1/145‑33 (MQ=255)                                ccAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacgacacc                                                                                                           >  1:362811‑M1/1‑113 (MQ=255)                                ccAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAAC‑GT‑ACGTCtgcagggcctggtagccctcgctgacgacaccgttgagg                                                                                                    <  2:141884‑M1/150‑40 (MQ=255)                                 cAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacgacaccgttgag                                                                                                     <  2:417580‑M1/150‑39 (MQ=255)                                  aaGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGACGTGCGAGCGGACGTAGCACag                                                                                                    >  2:234903/1‑150 (MQ=255)                                                    tCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTc                                                                                  >  1:444225/1‑150 (MQ=255)                                                        aaGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTg                                                                              <  2:289794/150‑1 (MQ=255)                                                                    cAGGTGCCGACACCATTGATAGTGGTAACGGCAACGCCCTCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCa                                                                  <  1:69288/150‑1 (MQ=255)                                                                         gCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAAt                                                             <  2:55009/150‑1 (MQ=255)                                                                            gACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGtt                                                          <  1:25857/150‑1 (MQ=255)                                                                               cccATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGGCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCAc                                                       <  1:83073/149‑1 (MQ=255)                                                                                  aTTGATAGTGGTAACGGAAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAg                                                    <  1:22776/150‑1 (MQ=255)                                                                                                 ggCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGACTAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCAc                                     <  1:234903/150‑1 (MQ=255)                                                                                                 ggCAACGACATCATCTCCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGCCGGACGTTGCACAGAAGAAAAGTGCTGGGCGGCATCATGACACTACCAGCAATGTTCACCAGTACATCACCGAGCAc                                     >  1:321740/1‑150 (MQ=255)                                                                                                                      gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACCCCAGCGACAACTGGTTGTGTGTGCTGTCACTACCTTCAATGTTCACCAGTACATCACCGAGCTCTACACCGAGTTCGATATCTcc                <  2:15354/150‑1 (MQ=255)                                                                                                                      gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTcc                >  2:24419/1‑150 (MQ=255)                                                                                                                          tGATCCCCCTCAATGGAGCAGTCAGCGAGGGATACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTg            >  2:398449/1‑150 (MQ=255)                                                                                                                          tGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCaa                                                              <  2:224946/100‑1 (MQ=255)                                                                                                                          tGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCaa                                                              >  1:224946/1‑100 (MQ=255)                                                                                                                                 ccTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgtacgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttgg     <  2:141884‑M2/150‑112 (MQ=255)                                                                                                                                  cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttg    <  2:417580‑M2/150‑113 (MQ=255)                                                                                                                                  cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTacac                                >  2:344736/1‑122 (MQ=255)                                                                                                                                  cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTacac                                <  1:344736/122‑1 (MQ=255)                                                                                                                                  cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGAc    >  1:223386/1‑150 (MQ=255)                                                                                                                                    cAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACgg  <  2:444225/150‑1 (MQ=255)                                                                                                                                        ggTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttgg   <  2:362811‑M2/145‑114 (MQ=255)                                                                                                                                        ggTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttgg   >  1:362811‑M2/1‑32 (MQ=255)                                                                                                                                                |                                                                                                                                          CCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGG  >  NC_002947/219776‑220056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.