New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 219919	24 (1.480)	4 (0.260)	4/248	NT	14.0%	coding (25425/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 219942	26 (1.660)					coding (25448/26049 nt)	PP_0168	putative surface adhesion protein

AAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGTGGCAATGGCAAT  >  NC_002947/219809‑220087                                                                                                                                      |                                                                                                                                                  aaGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGACGTGCGAGCGGACGTAGCACag                                                                                                                                   >  2:234903/1‑150 (MQ=255)                   tCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTc                                                                                                                 >  1:444225/1‑150 (MQ=255)                       aaGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTg                                                                                                             <  2:289794/150‑1 (MQ=255)                                   cAGGTGCCGACACCATTGATAGTGGTAACGGCAACGCCCTCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCa                                                                                                 <  1:69288/150‑1 (MQ=255)                                        gCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAAt                                                                                            <  2:55009/150‑1 (MQ=255)                                           gACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGtt                                                                                         <  1:25857/150‑1 (MQ=255)                                              cccATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGGCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCAc                                                                                      <  1:83073/149‑1 (MQ=255)                                                 aTTGATAGTGGTAACGGAAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAg                                                                                   <  1:22776/150‑1 (MQ=255)                                                                ggCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGACTAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCAc                                                                    <  1:234903/150‑1 (MQ=255)                                                                ggCAACGACATCATCTCCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGCCGGACGTTGCACAGAAGAAAAGTGCTGGGCGGCATCATGACACTACCAGCAATGTTCACCAGTACATCACCGAGCAc                                                                    >  1:321740/1‑150 (MQ=255)                                                                                     gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACCCCAGCGACAACTGGTTGTGTGTGCTGTCACTACCTTCAATGTTCACCAGTACATCACCGAGCTCTACACCGAGTTCGATATCTcc                                               <  2:15354/150‑1 (MQ=255)                                                                                     gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTcc                                               >  2:24419/1‑150 (MQ=255)                                                                                         tGATCCCCCTCAATGGAGCAGTCAGCGAGGGATACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTg                                           >  2:398449/1‑150 (MQ=255)                                                                                         tGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCaa                                                                                             >  1:224946/1‑100 (MQ=255)                                                                                         tGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCaa                                                                                             <  2:224946/100‑1 (MQ=255)                                                                                                ccTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgtacgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttgg                                    <  2:141884‑M2/150‑112 (MQ=255)                                                                                                 cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttg                                   <  2:417580‑M2/150‑113 (MQ=255)                                                                                                 cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTacac                                                               <  1:344736/122‑1 (MQ=255)                                                                                                 cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTacac                                                               >  2:344736/1‑122 (MQ=255)                                                                                                 cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGAc                                   >  1:223386/1‑150 (MQ=255)                                                                                                   cAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACgg                                 <  2:444225/150‑1 (MQ=255)                                                                                                       ggTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttgg                                  <  2:362811‑M2/145‑114 (MQ=255)                                                                                                       ggTGTCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttgg                                  >  1:362811‑M2/1‑32 (MQ=255)                                                                                                                 gCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGt                   <  1:432810/150‑1 (MQ=255)                                                                                                                         tACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGACAAGGACGGCAATAACATCATGTCGAGtctc           >  2:248222/1‑147 (MQ=255)                                                                                                                          aCCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtggca          >  1:319231/1‑150 (MQ=255)                                                                                                                             aGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAg                                                           >  2:198095/1‑98 (MQ=255)                                                                                                                             aGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAg                                                           <  1:198095/98‑1 (MQ=255)                                                                                                                             aGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtggcaatg       <  1:24419/150‑1 (MQ=255)                                                                                                                             aGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGCGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtggcaatg       <  1:360831/150‑1 (MQ=255)                                                                                                                                  cTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGTggcaatggcaat  <  2:112142/150‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                  AAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGTGGCAATGGCAAT  >  NC_002947/219809‑220087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.