| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1758576 = | 8 (0.490) | 3 (0.200) | 3/238 | NT | 24.6% | coding (1590/1686 nt) | PP_1563 | terminase large subunit |
| ? | NC_002947 | 1758613 = | 11 (0.730) | coding (1627/1686 nt) | PP_1563 | terminase large subunit | |||||
CCGGTACTGACCTGGATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCT > NC_002947/1758472‑1758709 | ccGGTACTGAGCTGAATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCGGGAGGACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCAT‑GCCCATCACGCTCGCTATcgaa > 2:172021/1‑149 (MQ=255)ccGGTACTGACCTGGATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATcgac < 1:198208/150‑1 (MQ=255)aagcaccagaaagatgatcaggccagttttcataggttttcccgttagccaaccacgatcgggctggcaagaaagtcatcgaagtggccggagtcgtcgataccGAGCTTGATCACCGGCTGTGCCGT‑GGCCATCAAGCTCg < 1:113025‑M1/38‑1 (MQ=255)aagcaccagaaagatgatcaggccagttttcataggttttcccgttagccaaccacgatcgggctggcaagaaagtcatcgaagtggccggagtcgtcgataccGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCg > 2:113025‑M1/105‑142 (MQ=255) gTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGtt > 1:157945/1‑150 (MQ=255) acaacaTCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAAc > 2:60505/1‑150 (MQ=255) caacaTCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACg < 1:60505/150‑1 (MQ=255) tACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTg > 1:437402/1‑132 (MQ=255) tACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTg < 2:437402/132‑1 (MQ=255) cggagtcgtcgataccGAGCTTGATGGCCA‑CGGCGCAGCCGGTGATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCt < 1:236404‑M1/134‑1 (MQ=255) aGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCt > 2:389736/1‑150 (MQ=255) | CCGGTACTGACCTGGATGGCCTCGAATGTCGTGGCGAAGCTGGACGTGAAGGACAACATCTACCCCAACAAGGAGCGCCCGGAGAACAAGATCGACGGCATGGTGAGCTTGATCACCGGCTGCGCCGT‑GGCCATCAAGCTCGGTATCGACGACTCCGGCCACTTCGATGACTTTCTTGCCAGCCCGATCGTGGTTGGCTAACGGGAAAACCTATGAAAACTGGCCTGATCATCTTTCT > NC_002947/1758472‑1758709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |