New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5164637 =	13 (0.800)	4 (0.260)	4/244	NT	24.7%	coding (3291/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5164754 =	12 (0.780)					coding (3174/3906 nt)	hrpA	ATP‑dependent helicase HrpA

CCCAGCTGCCGCGCTTGCGTTCAGCCAGCGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCG  >  NC_002947/5164489‑5164784                                                                                                                                                     |                                                                                                                                                     cccAGCTGCCGCGCTTGCGTTCAGCCAGCGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTAcagca                                                                                                                                                     <  2:295799/150‑1 (MQ=255)                           agcGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑c                                                                                                                          >  2:270239/1‑150 (MQ=255)                                  ccAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCcgc                                                                                                                   >  2:68552/1‑150 (MQ=255)                                     aGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTAAAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCa                                                                                                                <  1:424906/150‑1 (MQ=255)                                      ttcagcgaagtgaaacagaccgcccagcagaagatcgccggcctgtcgatgaccgtgtacccggcactggtggaagacaacggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAg                                                                                                               <  2:89814‑M1/39‑1 (MQ=255)                                                                   gaagatcgccggcctgtcgatgaccgtgtacccggcactggtggaagacaacggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTgca                                                                                  <  2:40378‑M1/68‑1 (MQ=255)                                                                   cGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGGCTACCTCGTCCATCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTgca                                                                                  <  2:373460/150‑1 (MQ=255)                                                                          aaGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAg                                                                           >  2:348726/1‑150 (MQ=255)                                                                                                gCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGc                                                     <  2:205428/150‑1 (MQ=255)                                                                                                    gcagAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGaa                                                 <  1:270239/150‑1 (MQ=255)                                                                                                    gcagAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTCCCGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGaa                                                 >  1:23226/1‑150 (MQ=255)                                                                                                     cagAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGaaa                                                <  1:348726/150‑1 (MQ=255)                                                                                                                    cAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGCCCGAAAC‑ACAGCCACGGCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTg                                 >  2:220723/1‑150 (MQ=255)                                                                                                                      cggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTggg                               >  1:40378‑M1/32‑150 (MQ=255)                                                                                                                          actgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCga                           >  1:89814‑M1/28‑150 (MQ=255)                                                                                                                                      cATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTc               >  1:210352/1‑150 (MQ=255)                                                                                                                                         ttCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAAc                                                                             <  1:195370/85‑1 (MQ=255)                                                                                                                                         ttCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAAc                                                                             >  2:195370/1‑85 (MQ=255)                                                                                                                                                   agcagGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCACTTGCGGCAGCAAAAGCCGTTGAAAGACGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCCAGACACGCCCCGCACGCACCGTGccc  >  2:212891/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCCAGCTGCCGCGCTTGCGTTCAGCCAGCGCGGCCAAGGCCGCACCTTCACGTGGCAACGGTTGTTCGCCTTCAAGGATGCAACTGTCCAGGCTGGCCAGCAGAATGTCTTCGACCAGCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAG‑CTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCG  >  NC_002947/5164489‑5164784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.