New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5164637 =	13 (0.800)	4 (0.260)	4/244	NT	24.7%	coding (3291/3906 nt)	hrpA	ATP‑dependent helicase HrpA
	?	NC_002947	5164754 =	12 (0.780)					coding (3174/3906 nt)	hrpA	ATP‑dependent helicase HrpA

GCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACC  >  NC_002947/5164606‑5164891                                                                                                                                                     |                                                                                                                                          cggcactgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTggg                                                                                                                                          >  1:40378‑M1/32‑150 (MQ=255)     actgtgcgtgaagggcgtttctcgaccCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCga                                                                                                                                      >  1:89814‑M1/28‑150 (MQ=255)                 cATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTc                                                                                                                          >  1:210352/1‑150 (MQ=255)                          tcgacccaggccgaagcggagtttcagcaccgccgcgccttgcaacggctgttgctgcagcaactggccgagccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGt                                                                                                                 >  1:89814‑M2/124‑150 (MQ=255)                              cccaggccgaagcggagtttcagcaccgccgcgccttgcaacggctgttgctgcagcaactggccgagccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCg                                                                                                             >  1:40378‑M2/120‑150 (MQ=255)                              agcagGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCACTTGCGGCAGCAAAAGCCGTTGAAAGACGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCCAGACACGCCCCGCACGCACCGTGccc                                                                                                             >  2:212891/1‑149 (MQ=255)                                        gCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTcca                                                                                                   >  1:17691/1‑150 (MQ=255)                                                            ttGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGCTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTc                                                                               <  1:68552/150‑1 (MQ=255)                                                                   gcAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACa                                                                        <  2:17691/150‑1 (MQ=255)                                                                                 tgcagcaactggccgagccggccaagttcctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGAtcttc                                                          <  2:40378‑M2/82‑1 (MQ=255)                                                                                    tCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTctgc                                                       <  1:220723/150‑1 (MQ=255)                                                                                                  cagcaACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGttt                                         >  1:382079/1‑150 (MQ=255)                                                                                                       aCAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACtt                                    >  1:5067/1‑150 (MQ=255)                                                                                                              ctgcgcggcaagctgccggggctgaccgagctgggcctgGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGaa                             <  2:89814‑M2/111‑1 (MQ=255)                                                                                                                       gcggctGTGCTTAAACTCCGCTTCGTTCTGTGTCGAGAAACGCCCTTCACGCACAGTGCCATTTTCTTCCACTAGTGCTGCGTACCCGGTCATCGACAGGCCCGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTCggt                    <  2:210352/150‑2 (MQ=255)                                                                                                                             gTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCAc              >  2:439123/1‑150 (MQ=255)                                                                                                                                     aCTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGgctgct      >  1:254523/1‑150 (MQ=255)                                                                                                                                         cGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTTAAGGCCTTGGCCTGCACCGGCTGCTCAcc  >  1:182667/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                          GCGCTTCTACCCGCCCCATTTCACGGTACAGCAGGCCCAGCTCGGTCAGCCCCGGCAGCTTGCCGCGCAGGAACTTGGCCGGCTCGGCCAGTTGCTGCAGCAACAGCCGTTGCAAGGCGCGGCGGTGCTGAAACTCCGCTTCGGCCTGGGTCGAGAAACGCCCTTCACGCACAGTGCCGTTGTCTTCCACCAGTGCCGGGTACACGGTCATCGACAGGCCGGCGATCTTCTGCTGGGCGGTCTGTTTCACTTCGCTGAAGGCCTTGGCCTGCACCGGCTGCTCACC  >  NC_002947/5164606‑5164891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.