New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3724527 =	11 (0.680)	3 (0.200)	3/242	NT	22.7%	coding (54/927 nt)	PP_3290	universal stress protein family protein
	?	NC_002947	3724571 =	10 (0.650)					coding (98/927 nt)	PP_3290	universal stress protein family protein

CATCACACCCACTGACGAAAGCGCGGAGGTTCACCATGGGGCAATATCGACAATTGCTGGTGCTGCTGACCGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATCAAGCGCCAGTACCAGCATTATCGCGCTCAGTTGACGGGACTGG  >  NC_002947/3724439‑3724693                                                                                                                                     |                                                                                                                           tggcgcttgatatcggcctcgttcagccgctcttcgcgcagaaggtgctcctcgcttggctcgaacaagcccagcacatgcacgctggCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTgg                                                                                                           >  1:114980‑M1/89‑150 (MQ=255) cATCACACCCACTGACGAAAGCGCGGAGGTTCACCATGGGGCAATATCGACAATTGCTGGTGCTGCTGACCGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTgg                                                                                                           <  2:198557/150‑1 (MQ=255)         gatatcggcctcgttcagccgctcttcgcgcagaaggtgctcctcgcttggctcgaacaagcccagcacatgcacgctggCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCAtgt                                                                                                                >  2:259376‑M1/81‑137 (MQ=255)         gatatcggcctcgttcagccgctcttcgcgcagaaggtgctcctcgcttggctcgaacaagcccagcacatgcacgctggCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCAtgt                                                                                                                <  1:259376‑M1/57‑1 (MQ=255)         ccACTGACGAAAGCGCGGAGGTTCACCATGGGGCAATATCGACAATTGCTGGTGCTGCTGACCGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTc                                                                                                   <  1:399340/150‑1 (MQ=255)                                cACCATGGGGCAATATCGACAATTGCTGGTGCTGCTGACCGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCt                                                                            >  2:169816/1‑150 (MQ=255)                                 aCCATGGGGCAATATCGACAATTGCTGGTGCTGCTGACCGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCgagg                                                                                      <  2:386196/139‑1 (MQ=255)                                 aCCATGGGGCAATATCGACAATTGCTGGTGCTGCTGACCGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCgagg                                                                                      >  1:386196/1‑139 (MQ=255)                                           aaTATCGACATTTGCTGGTGCTGCTGACCGAGGTCCATCCGCAGTCCGTCGCTTTGCGCCGAGCCCTTGCCTTCACGCAAGTCAGCGGCGCCAGCGTGCAGGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGc                                                                 <  1:29432/150‑1 (MQ=255)                                                            gTGCTGCTGAACGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGAGTGCATGTGATGGGCTTGTTCGAGCCAAGCGAGGAGGACCTTCTGCGCGAAGAGCGACTGAACGAGGCCGat                                                >  2:137480/1‑150 (MQ=255)                                                                       ccagcacatgcacgctggcgccgctgacttgcgccaaggcaagggctcggcgcaaagcggcgCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATCAAGCGCCa                                     >  1:114980‑M2/63‑150 (MQ=255)                                                                            acatgcacgctggcgccgctgacttgcgccaaggcaagggctcggcgcaaagcggcgCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATc                                             <  1:259376‑M2/80‑1 (MQ=255)                                                                            acatgcacgctggcgccgctgacttgcgccaaggcaagggctcggcgcaaagcggcgCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATc                                             >  2:259376‑M2/58‑137 (MQ=255)                                                                               aTCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATCAAGCGCCAGTACCAGc                             >  1:378839/1‑150 (MQ=255)                                                                                             GCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATCAAGCGCCAGTACCAGCATTATCGCGCTCAg               <  2:154385‑M1/150‑1 (MQ=255)                                                                                                             ttgccttgGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATCAAGCGCCAGTACCAGCATTATCGCGCTCAGTTGACGGGACTgg  <  2:256842/147‑1 (MQ=255)                                                                                                             ttgccttgGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATCAAGCGCCAGTACCAGCATTATCGCGCTCAGTTGACGGGACTgg  >  1:256842/1‑147 (MQ=255)                                                                                                                                     |                                                                                                                           CATCACACCCACTGACGAAAGCGCGGAGGTTCACCATGGGGCAATATCGACAATTGCTGGTGCTGCTGACCGAGGTCGATCCGCATTCCGCCGCTTTGCGCCGAGCCCTTGCCTTGGCGCAAGTCAGCGGCGCCAGCGTGCATGTGCTGGGCTTGTTCGAGCCAAGCGAGGAGCACCTTCTGCGCGAAGAGCGGCTGAACGAGGCCGATATCAAGCGCCAGTACCAGCATTATCGCGCTCAGTTGACGGGACTGG  >  NC_002947/3724439‑3724693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.