| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6006595 = | 57 (0.820) | 20 (0.400) | 12/190 | 3.9 | 37.3% | intergenic (+7/+92) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | 6006679 = | 26 (0.520) | intergenic (+91/+8) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCGGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6006778‑6006595‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGC > NC_002947/6006679‑6006825 GCGGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTAC > 1:880927/1‑150GCGGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTAC < 1:692358/150‑1 gcGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTG < 1:189722/148‑1 GAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTG < 2:276013/150‑1 AGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGG < 2:1013833/150‑1 CGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGA < 1:464267/150‑1 TGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG < 2:945401/150‑1 TGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG < 1:205819/150‑1 TGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGCTCTCCTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCCGTACCTGTGGGAGCGc < 2:936086/150‑2 GCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCAACAGGTCGTATGCCCTGTACCTGTGGGAGCGGG < 1:1400665/150‑1 GCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCTTCGGTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGA < 1:30228/150‑1 TTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGT < 2:297497/134‑1 TTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGT > 1:297497/1‑134 TGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAA < 2:880927/150‑1 TGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG > 2:840167/1‑137 TGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGG < 1:840167/137‑1 ATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTAC < 1:262162/97‑1 ATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTAC > 2:262162/1‑97 CCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGC > 1:618027/1‑123 CCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGC < 2:618027/123‑1 TCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCACATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCc > 2:735659/1‑149 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT > 1:1437886/1‑150 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT > 2:260206/1‑150 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT > 2:844428/1‑150 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT > 2:1361158/1‑150 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT > 2:1426572/1‑150 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCC > 1:1492097/1‑122 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCC < 2:1492097/122‑1 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTC < 1:1675041/115‑1 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTC > 2:1675041/1‑115 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCA < 1:1438635/87‑1 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCA > 2:1438635/1‑87 CCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCAGCAGGAGGTCCACATCCCACAAAACGATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCT > 2:843145/1‑150 CACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTC > 2:3881/1‑150 GTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCC > 1:979192/1‑80 GTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCC < 2:979192/80‑1 TCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCC > 2:898585/1‑150 CCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGG < 2:1437886/150‑1 GTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATT > 2:1219453/1‑80 GTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATT < 1:1219453/80‑1 GGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACA < 2:30228/150‑1 GGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCA < 2:825859/96‑1 GGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCA > 1:825859/1‑96 GGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCT > 1:278797/1‑87 GGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCT < 2:278797/87‑1 AGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACTGCTCGCCGCCTCGCCGGGTGCGCGGCCACACC < 2:1400665/150‑1 GCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCG > 2:1215960/1‑141 GCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCG < 1:1215960/141‑1 GGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAG < 2:215255/91‑1 GGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAG > 1:215255/1‑91 CCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCA > 2:1221567/1‑83 CCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCA < 2:1139121/83‑1 CCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCA < 1:1221567/83‑1 CCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCA > 1:1139121/1‑83 AAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGC < 1:276013/150‑1 GAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCG > 2:908144/1‑150 CCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGG < 1:1013833/150‑1 CGGTGCAGGTGATCAAAGACGCGGCAGGATAACCACATCGGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGG > 1:1278008/1‑150 GGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGC < 1:846993/150‑1 GCGGCGAGCGGTTGCGGCGGTTGAGTGCGTTCCTGGAAGGCGAGGTGGCGGCAATGGATTTGCCGGATGTGGAAATCCTGCCGCGTCTTTGATCACCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTCGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6006778‑6006595‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgtgggagcgggcgagcccgcgaagaggccggtGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCGCGGCCACACCAGGTAGTAATCCATGCCGCTGGGC > NC_002947/6006679‑6006825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |