New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6006595 =57 (0.820)20 (0.400) 12/190 3.9 37.3% intergenic (+7/+92) ydcJ/PP_5261 metalloprotein/LysR family transcriptional regulator
?NC_002947 6006679 = 26 (0.520)intergenic (+91/+8) ydcJ/PP_5261 metalloprotein/LysR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.

CGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGC  >  NC_002947/6006453‑6006662
                                                                                                                                              |                                                                   
cGGCAGGAACGCCAACCGCGAAGCGTTCGAAGCGGCGACGGGCTTGCAGCCTTAGGATGAGCTGGCGCTGTATGAGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCct                                                              <  1:390184/150‑1 (MQ=255)
        aCGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCgg                                                      <  1:676819/150‑1 (MQ=255)
         cGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCggg                                                     >  1:1438492/1‑150 (MQ=255)
            cAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTc                                                  <  1:542367/150‑1 (MQ=255)
            cAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTc                                                  <  2:274148/150‑1 (MQ=255)
            cAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTc                                                  >  1:274148/1‑150 (MQ=255)
             aaCCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCg                                                 >  1:68981/1‑150 (MQ=255)
             aaCCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCg                                                 >  1:898728/1‑150 (MQ=255)
               ccGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGcc                                               >  2:426337/1‑150 (MQ=255)
                 gcgAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCg                                             >  1:591320/1‑150 (MQ=255)
                                 ggcgCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAgg                             >  2:916755/1‑150 (MQ=255)
                                    gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTAc                                                                    >  1:337689/1‑108 (MQ=255)
                                    gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTAc                                                                    <  2:337689/108‑1 (MQ=255)
                                    gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCgg                                                      <  1:1177551/122‑1 (MQ=255)
                                    gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCgg                                                      >  2:1177551/1‑122 (MQ=255)
                                    gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCa                          <  1:1346654/150‑1 (MQ=255)
                                       ggggTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATAc                       <  1:1097496/150‑1 (MQ=255)
                                          gTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg                                    <  2:737478/134‑1 (MQ=255)
                                          gTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg                                    >  1:737478/1‑134 (MQ=255)
                                          gTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGAc                    <  2:1546656/150‑1 (MQ=255)
                                             gCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtg                 <  2:493071/150‑1 (MQ=255)
                                              cAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt                >  2:1485280/1‑150 (MQ=255)
                                              cAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt                <  2:898728/150‑1 (MQ=255)
                                              cAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt                <  1:1179650/150‑1 (MQ=255)
                                               aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg               <  2:206635/150‑1 (MQ=255)
                                               aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg               >  2:812278/1‑150 (MQ=255)
                                                ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTACCTCTGCGCCGGACTCTTCGGGGTCGCCCCGGGCCCCGCTTGGACCGGGCATACGACCTGTgg              <  2:887230/150‑1 (MQ=255)
                                                ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg              <  2:990067/150‑1 (MQ=255)
                                                  tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCt                  >  1:360769/1‑144 (MQ=255)
                                                  tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCt                  <  2:360769/144‑1 (MQ=255)
                                                  tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGa            <  1:426337/150‑1 (MQ=255)
                                                      ggATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCgg        <  1:1485280/150‑1 (MQ=255)
                                                       gATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGTACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTcc                                         >  2:312258/1‑116 (MQ=255)
                                                       gATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTcc                                         <  1:312258/116‑1 (MQ=255)
                                                        aTGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGc      <  1:812278/150‑1 (MQ=255)
                                                          gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGTGCATACGACCTGTGGGAGCGGGCGa    <  1:37673/150‑1 (MQ=255)
                                                          gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGctc    <  1:1652413/150‑3 (MQ=255)
                                                          gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGa    <  1:916755/150‑1 (MQ=255)
                                                          gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGa    <  2:1438492/150‑1 (MQ=255)
                                                              tGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCg         <  1:498587/141‑1 (MQ=255)
                                                              tGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATAAGACCTGTGGGAGCg         >  2:498587/1‑141 (MQ=255)
                                                                           gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGc  <  1:1553467/135‑1 (MQ=255)
                                                                           gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGc  >  2:1553467/1‑135 (MQ=255)
                                                                              aaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg              >  2:28346/1‑120 (MQ=255)
                                                                              aaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg              <  1:28346/120‑1 (MQ=255)
                                                                                             gCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATa                        <  2:185782/95‑1 (MQ=255)
                                                                                             gCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATa                        >  1:185782/1‑95 (MQ=255)
                                                                                               tGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc          <  2:1571872/107‑1 (MQ=255)
                                                                                               tGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc          >  1:1571872/1‑107 (MQ=255)
                                                                                                                gCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt                <  1:358884/84‑1 (MQ=255)
                                                                                                                gCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt                >  2:358884/1‑84 (MQ=255)
                                                                                                                       aCCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATa                        <  1:1630952/69‑1 (MQ=255)
                                                                                                                       aCCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATa                        >  2:1630952/1‑69 (MQ=255)
                                                                                                                              ttCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc          >  2:1491237/1‑76 (MQ=255)
                                                                                                                              ttCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGc          <  1:1491237/76‑1 (MQ=255)
                                                                                                                                    gTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGc  <  2:143084/78‑1 (MQ=255)
                                                                                                                                    gTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGc  >  1:143084/1‑78 (MQ=255)
                                                                                                                                              |                                                                   
CGGCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGC  >  NC_002947/6006453‑6006662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.