New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1780109 =51 (0.740)20 (0.340) 16/224 3.6 29.1% intergenic (+26/+80) PP_1587/dapC NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
?NC_002947 1780171 = 54 (0.910)intergenic (+88/+18) PP_1587/dapC NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
Rejected: Coverage evenness skew score above cutoff.

GCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAAC  >  NC_002947/1779969‑1780254
                                                                                                                                            |                                                                                                                                                 
gcAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGcgaa                                                                                                                                          <  1:208018/150‑4 (MQ=255)
  aGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACACTATCAAGGCCCTTCGCGGGCGCGCCCGcgaagg                                                                                                                                        <  2:579412/150‑6 (MQ=255)
            gCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTActgc                                                                                                                              >  2:419004/1‑150 (MQ=255)
                tACAACCTGCATCGTCAACACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTActgcgctg                                                                                                                          >  2:1450161/1‑150 (MQ=255)
                 aCAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTAcagcgctga                                                                                                                         <  2:1398295/150‑2 (MQ=255)
                     ccTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCcaca                                                                                                                                      >  2:779062/1‑133 (MQ=255)
                     ccTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCcaca                                                                                                                                      <  1:779062/133‑1 (MQ=255)
                              tCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGgcgc                                                                                                                                                   <  2:1397809/111‑1 (MQ=255)
                              tCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGgcgc                                                                                                                                                   >  1:1397809/1‑111 (MQ=255)
                                aacACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAgcgc                                                                                                          <  1:1450161/148‑1 (MQ=255)
                                aGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGgcgc                                                                                                                                                   <  2:805110/109‑1 (MQ=255)
                                aGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGgcgc                                                                                                                                                   >  1:805110/1‑109 (MQ=255)
                                          gggggATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCtttg                                                                                                <  1:1742374/150‑1 (MQ=255)
                                           ggggATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGTGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTCCCTGTgg                                                                                               <  1:944630/150‑1 (MQ=255)
                                             ggATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGGACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGa                                                                                             >  1:51733/1‑150 (MQ=255)
                                                tGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCGAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCg                                                                                          <  1:556207/150‑1 (MQ=255)
                                                 gAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCgg                                                                                         <  2:1096139/150‑1 (MQ=255)
                                                              aaGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACCGGTAGTGATGTTCGCTTTTAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGaa                                                                            >  2:485497/1‑150 (MQ=255)
                                                              aaGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGaa                                                                            <  1:419004/150‑1 (MQ=255)
                                                               aGTACTGGGTGAGCTGGAGATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGGCCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTTGCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAg                                                                           <  1:326778/150‑1 (MQ=255)
                                                                   cTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                       >  1:1373594/1‑150 (MQ=255)
                                                                       gTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTgct                                                                   <  2:1373594/150‑3 (MQ=255)
                                                                            cTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAgc                                                                                                            >  2:1493864/1‑104 (MQ=255)
                                                                            cTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAgc                                                                                                            <  1:1493864/104‑1 (MQ=255)
                                                                             tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg                                                                                               >  1:1390518/1‑116 (MQ=255)
                                                                             tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg                                                                                               <  2:1390518/116‑1 (MQ=255)
                                                                             tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGccc                                                                                 <  2:1438433/130‑1 (MQ=255)
                                                                             tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGccc                                                                                 >  1:1438433/1‑130 (MQ=255)
                                                                                   tgagtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGc                                                       >  1:1724436/1‑150 (MQ=255)
                                                                                     agtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCgg                                                                                         >  1:1290503/1‑114 (MQ=255)
                                                                                     agtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCgg                                                                                         <  2:1290503/114‑1 (MQ=255)
                                                                                           gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCcac                                                                                                                                       <  2:1541304/62‑1 (MQ=255)
                                                                                           gCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCcac                                                                                                                                       >  1:1541304/1‑62 (MQ=255)
                                                                                               aCCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCa                                                      >  2:949972/1‑139 (MQ=255)
                                                                                               aCCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCa                                                      <  1:949972/139‑1 (MQ=255)
                                                                                                ccTGGGTTCAGTCAAGTAGACCCTATCNAGGCCCTTCGCGNGCGCGCNCNCTCCCACAGGGACTGCGCTGCGCTTGAAATAAGCGCTGTACCTGTGGGAGCGGGCGTGGCCGCGAAGGGGTTGCTCAGAGGTTTTGCAGGAAGGCGCGaa                                          >  1:937026/1‑150 (MQ=39)
                                                                                                     gTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATgcgc                                     >  2:1443231/1‑150 (MQ=255)
                                                                                                       tCAGGCAAGTAGCGCCTAGCAAGGCGCTTCGCGGGCGCGCCCCCTTCCACAGGTGCTGGGCTGCGCTTGAAATGCGCGCCGTATCTGTGGGGGCGGGCGTGCCCTCGAAGGGGTTGATCAGCTGTTTTGCAGGAAGGCGCGAATGCGCTc                                   <  2:937026/150‑1 (MQ=255)
                                                                                                             aaGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCcgccgc                             <  2:51733/150‑1 (MQ=255)
                                                                                                               gTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGAAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCtt                           >  2:53923/1‑150 (MQ=255)
                                                                                                                     ccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACTTGCTGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTGTTGTAGGAAGGCGCGAATCCGCTCCGCCGCTTCGATGc                     >  1:187046/1‑150 (MQ=38)
                                                                                                                       tATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCAt                   >  2:760423/1‑150 (MQ=255)
                                                                                                                           aaGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg                                                                         >  2:186263/1‑92 (MQ=255)
                                                                                                                           aaGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg                                                                         <  1:186263/92‑1 (MQ=255)
                                                                                                                              gCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTg                                                        <  2:1547786/106‑1 (MQ=255)
                                                                                                                              gCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTg                                                        >  1:1547786/1‑106 (MQ=255)
                                                                                                                              ccccTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg                                                                                               >  1:1370191/2‑67 (MQ=255)
                                                                                                                              ccccTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTgg                                                                                               <  2:1370191/66‑1 (MQ=255)
                                                                                                                                 cTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGa                        <  2:861568/135‑1 (MQ=255)
                                                                                                                                 cTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGa                        >  1:861568/1‑135 (MQ=255)
                                                                                                                                        ggCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAAc  <  1:1443231/150‑1 (MQ=255)
                                                                                                                                         gcgctcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                       <  1:555493/80‑1 (MQ=255)
                                                                                                                                         gcgcgcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                       >  2:555493/1‑80 (MQ=255)
                                                                                                                                            |                                                                                                                                                 
GCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAAC  >  NC_002947/1779969‑1780254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.