New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1780109 =	51 (0.740)	20 (0.340)	16/224	3.6	29.1%	intergenic (+26/+80)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780171 =	54 (0.910)					intergenic (+88/+18)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
Rejected: Coverage evenness skew score above cutoff.

AAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGA  >  NC_002947/1780031‑1780308                                                                                                                                             |                                                                                                                                           aaGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACCGGTAGTGATGTTCGCTTTTAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGaa                                                                                                                                   >  2:485497/1‑150 (MQ=255) aaGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGaa                                                                                                                                   <  1:419004/150‑1 (MQ=255)  aGTACTGGGTGAGCTGGAGATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGGCCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTTGCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAg                                                                                                                                  <  1:326778/150‑1 (MQ=255)      cTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                                                                              >  1:1373594/1‑150 (MQ=255)          gTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTgct                                                                                                                          <  2:1373594/150‑3 (MQ=255)                tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGccc                                                                                                                                        <  2:1438433/130‑1 (MQ=255)                tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGccc                                                                                                                                        >  1:1438433/1‑130 (MQ=255)                      tgagtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGc                                                                                                              >  1:1724436/1‑150 (MQ=255)                                  aCCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCa                                                                                                             >  2:949972/1‑139 (MQ=255)                                  aCCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCa                                                                                                             <  1:949972/139‑1 (MQ=255)                                   ccTGGGTTCAGTCAAGTAGACCCTATCNAGGCCCTTCGCGNGCGCGCNCNCTCCCACAGGGACTGCGCTGCGCTTGAAATAAGCGCTGTACCTGTGGGAGCGGGCGTGGCCGCGAAGGGGTTGCTCAGAGGTTTTGCAGGAAGGCGCGaa                                                                                                 >  1:937026/1‑150 (MQ=39)                                        gTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATgcgc                                                                                            >  2:1443231/1‑150 (MQ=255)                                          tCAGGCAAGTAGCGCCTAGCAAGGCGCTTCGCGGGCGCGCCCCCTTCCACAGGTGCTGGGCTGCGCTTGAAATGCGCGCCGTATCTGTGGGGGCGGGCGTGCCCTCGAAGGGGTTGATCAGCTGTTTTGCAGGAAGGCGCGAATGCGCTc                                                                                          <  2:937026/150‑1 (MQ=255)                                                aaGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCcgccgc                                                                                    <  2:51733/150‑1 (MQ=255)                                                  gTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGAAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCtt                                                                                  >  2:53923/1‑150 (MQ=255)                                                        ccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACTTGCTGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTGTTGTAGGAAGGCGCGAATCCGCTCCGCCGCTTCGATGc                                                                            >  1:187046/1‑150 (MQ=38)                                                          tATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑At                                                                         >  2:760423/1‑150 (MQ=255)                                                              aaGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg                                                                                                                                >  2:186263/1‑92 (MQ=255)                                                              aaGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAggg                                                                                                                                <  1:186263/92‑1 (MQ=255)                                                                 gCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTg                                                                                                               <  2:1547786/106‑1 (MQ=255)                                                                 gCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTg                                                                                                               >  1:1547786/1‑106 (MQ=255)                                                                    cTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGa                                                                               >  1:861568/1‑135 (MQ=255)                                                                    cTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGa                                                                               <  2:861568/135‑1 (MQ=255)                                                                           ggCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAAc                                                        <  1:1443231/150‑1 (MQ=255)                                                                            gcgctcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                                                                              <  1:555493/80‑1 (MQ=255)                                                                            gcgcgcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                                                                              >  2:555493/1‑80 (MQ=255)                                                                                gcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAg                                                                                                        >  2:1318813/1‑98 (MQ=255)                                                                                gcCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAg                                                                                                        <  1:1318813/98‑1 (MQ=255)                                                                                   cGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑a                                                                          <  2:1597278/124‑1 (MQ=255)                                                                                   cGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑a                                                                          >  1:1597278/1‑124 (MQ=255)                                                                                        ccACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGtt                                                                                                                             >  1:1543802/1‑69 (MQ=255)                                                                                        ccACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGtt                                                                                                                             <  2:1543802/69‑1 (MQ=255)                                                                                          acaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGa                                                                                                                           >  2:1697161/1‑69 (MQ=255)                                                                                          acaGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGa                                                                                                                           <  1:1697161/69‑1 (MQ=255)                                                                                            aGGAACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAAGCGCCAAAGCCCTTCGCCGCAAGGAGGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAcgc                                       >  2:381499/1‑150 (MQ=255)                                                                                              gTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAGGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACgcgc                                     >  2:1121947/1‑150 (MQ=255)                                                                                              gTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGc                                                                <  2:1333249/123‑1 (MQ=255)                                                                                              gTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGc                                                                >  1:1333249/1‑123 (MQ=255)                                                                                                  tgcgctgcgcTTGAAATCAGCGCTGTACCTGTGGGAGCGGgcgcgc                                                                                                                                          <  2:849072/46‑1 (MQ=255)                                                                                                  tgcgctgcgcTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGgc                                                                                                      >  1:800457/1‑82 (MQ=255)                                                                                                  tgcgctgcgcTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGgc                                                                                                      <  2:800457/82‑1 (MQ=255)                                                                                                  tgcgctgcgcTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCg                                                               <  1:841399/120‑1 (MQ=255)                                                                                                  tgcgctgcgcTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCg                                                               >  2:841399/1‑120 (MQ=255)                                                                                                    cgctgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGcc                               >  2:821806/1‑149 (MQ=255)                                                                                                     gctgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAc                              >  2:849317/1‑150 (MQ=255)                                                                                                     gctgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCAc                              >  1:1149842/1‑150 (MQ=255)                                                                                                       tgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGc                                                           <  2:1228213/119‑1 (MQ=255)                                                                                                       tgcgctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGc                                                           >  1:1228213/1‑119 (MQ=255)                                                                                                           ctTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCGCGCGAAGGGGTTGATCAACCGTTTTGCAGGAAGGGAAGAATGCGCTGCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGt                        >  1:1517680/1‑150 (MQ=255)                                                                                                             tGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTc                      >  2:626013/1‑150 (MQ=255)                                                                                                               aaaTCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAc                    <  2:1724436/150‑1 (MQ=255)                                                                                                                gcgcAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAcc                   <  2:1643706/147‑1 (MQ=255)                                                                                                                aaTCAGCGCTGTACCTGTGGGAGCGGGCGTGCGCGCAACCCGATCTATGAGCGGTGTTTCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCAcc                   >  1:1170360/1‑150 (MQ=255)                                                                                                                        cTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGATTGCGTGAAATGCTGCGA‑TATCGCAAGCATTCCCAGGCGCACGCGCCCGGCACCCGGTTTCACCGCATCCAc           >  1:641255/1‑150 (MQ=255)                                                                                                                         tGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACt          >  1:696644/1‑150 (MQ=255)                                                                                                                            aCCTGTGGGAGCGGGCGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCa       <  1:1460598/150‑1 (MQ=255)                                                                                                                             ccTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAc      >  2:480612/1‑150 (MQ=255)                                                                                                                                 tgGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAANGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGGACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcgcgc  >  1:1239033/1‑149 (MQ=255)                                                                                                                                             tGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCg                           >  1:951061/1‑113 (MQ=255)                                                                                                                                             tGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCg                           <  2:951061/113‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           AAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGC‑ATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGA  >  NC_002947/1780031‑1780308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.