New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1967188 = | 40 (0.630) | 11 (0.230) | 10/208 | 4.0 | 23.1% | intergenic (+15/+104) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
? | NC_002947 | 1967284 = | 43 (0.890) | intergenic (+111/+8) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
Rejected: Coverage evenness skew score above cutoff. |
CTGGGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCC > NC_002947/1967042‑1967324 | cTGGGGCTGCGGACCGTATTCCGCAGGGAGATCTGCAACAGTTGCCACGCCACGTTCCTCTTCCTTGCGCGCTGCCTGCAGCTGGACGGGCGCCGGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGc < 1:658377/150‑1 (MQ=255) tGGGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGcc > 2:730657/1‑150 (MQ=255) gCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTcgc < 2:646531/150‑1 (MQ=255) gACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGc < 2:348250/139‑1 (MQ=255) gACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGc > 1:348250/1‑139 (MQ=255) aCCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGc > 2:503440/1‑150 (MQ=255) cGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCtt > 2:869896/1‑150 (MQ=255) gTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGcc < 1:213771/150‑1 (MQ=255) gcgcAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGc < 2:201424/150‑1 (MQ=255) cAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCAAGCCCGcgaa < 2:909148/150‑4 (MQ=255) cAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCAAGCCCGcgaa < 2:897234/150‑4 (MQ=255) gCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCcaca < 1:869896/150‑1 (MQ=255) cGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAg < 2:1381928/150‑1 (MQ=255) cAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCAcc < 2:367253/150‑1 (MQ=255) cAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCAcc > 1:367253/1‑150 (MQ=255) aaGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAggcagggcg > 1:367557/1‑143 (MQ=255) ttACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAAcc > 2:200119/1‑150 (MQ=255) cGACTGCATGTCCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTc < 2:1179761/150‑1 (MQ=255) ctgttcctgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGccc < 1:386038/150‑1 (MQ=255) tgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCcaca < 1:1452842/113‑1 (MQ=255) tgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCcaca > 2:1452842/1‑113 (MQ=255) tgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTgc < 2:1464670/139‑1 (MQ=255) tgGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTgc > 1:1464670/1‑139 (MQ=255) gAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTgg < 2:791083/150‑1 (MQ=255) gAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTgg < 2:668570/150‑1 (MQ=255) gcTGCATTCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCCTCGCGGGCTTGCTCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGc < 1:55337/150‑1 (MQ=255) tgcatgcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCgg < 1:730657/150‑1 (MQ=255) gcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCtgtg < 2:304811/138‑1 (MQ=255) gcaGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCtgtg > 1:304811/1‑138 (MQ=255) gAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTTCGCCCTGCCTGGCGGCGCGGGCCAGCCCGCGa > 2:688909/1‑150 (MQ=39) aaGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGaa < 1:503440/150‑1 (MQ=255) cAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGa < 1:1271807/125‑1 (MQ=255) cAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCACGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGa > 2:1271807/1‑125 (MQ=255) gccggcGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGc < 1:930930/149‑1 (MQ=255) gccggcGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGc > 2:930930/1‑149 (MQ=255) gCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGTAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGtt < 1:200119/150‑1 (MQ=255) gCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGt < 1:465004/123‑1 (MQ=255) gCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGt > 2:465004/1‑123 (MQ=255) tGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACGGGATCGCCGCAACCCTCAAGGATTGCCCCCTGCCTGTGGGAGCGGGCAAGCCCGGGAAGAGGCCGCGGCAGGGTTATTGGGCGTTGAACGCCTGCCCGTTcc > 2:30809/1‑149 (MQ=38) cGCTTTCCTGTACCGGCCTCTTCGCGGGATTGCCCGCTCCCACAAGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTTTGGGGGCGTGGCAGCCCGCCAAGAGGCCGACGCAGGTTTCTTGGGCGGTGAACGCCTGACCGGTCAcccc > 2:318538/1‑150 (MQ=255) | CTGGGGTTGCGGACCGAGTTGCGCAGGGCGATCTGCAAGAGTTACGACTGCATGTTCCTGTTCCTGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCC > NC_002947/1967042‑1967324 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |