New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3483915 =	11 (0.570)	5 (0.270)	5/250	NT	37.5%	coding (2052/3804 nt)	PP_3091	membrane protein
	?	NC_002947	3483952 =	6 (0.320)					coding (2015/3804 nt)	PP_3091	membrane protein

GACGAGCAGCAGGTGGCCTCGATCATCGAGGCCTACAACACCCTCAAGCTGTACCTGTTGCTGACCGAGCCCCAGGCCCATCCAGACCCGGCCTTCGTCGCTGCCAGCCTGCCCCAGGCCTGGGCCAGCGCCGCAGGCGAAGGCACCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3484067‑3483915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGATGATCGAGGCCACCTGCTGCTCGTCCAGGCGCCCGAGCATTTCTTCGGACAGTGACAG  >  NC_002947/3483952‑3484100                                                                                                                                                                                                                                                                                                                GACGAGCAGCAGGTGGCCTCGATCATCGAGGCCTACAACACCCTCAAGCTGTACCTGTTGCTGACCGAGCCCCAGGCCCATCCAGACCCGGCCTTCGTCGCTGCCAGCCTGCCCCAGGCCTGGGCCAGCGCCGCAGGCGAAGGCACCCCG                                                                                                                                                          >  2:286732/1‑150                                                                                                  TCGCTGCCAGCCTGCCCCAGGCCTGGGCCAGCGCCGCAGGCGAAGGCACCCCGGCCTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGATGA                                                         >  2:100861/1‑150                                                                                                                 CCCAGGCCTGGGCCAGCGCCGCAGGCGAAGGCACCACGGCCTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGATGATCGAGGCCACCTGCT                                          >  1:11855/1‑150                                                                                                                  CCAGGCCTGGGCCAGCGCCGCAGGCGAAGGCACCCCGGCCTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGA                                                            <  1:359918/131‑1                                                                                                                  CCAGGCCTGGGCCAGCGCCGCAGGCGAAGGCACCCCGGCCTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGA                                                            >  2:359918/1‑131                                                                                                                                   CCGCAGGCGAAGGCACCCCGGCCTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGATGATCGAGGCCACCTGCTGCTCGTCCAGGCGCCCGA                        <  1:100861/150‑1                                                                                                                                                         CTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGATGATCGAGGCCACCTGCTGCTCGTCCAGGCGCCCGAGCATTTCTTCGGACAGTGACAG  >  2:115653/1‑150                                                                                                                                                                                                                                                                                                                GACGAGCAGCAGGTGGCCTCGATCATCGAGGCCTACAACACCCTCAAGCTGTACCTGTTGCTGACCGAGCCCCAGGCCCATCCAGACCCGGCCTTCGTCGCTGCCAGCCTGCCCCAGGCCTGGGCCAGCGCCGCAGGCGAAGGCACCCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3484067‑3483915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccTGGGGCAGGCTGGCAGCGACGAAGGCCGGGTCTGGATGGGCCTGGGGCTCGGTCAGCAACAGGTACAGCTTGAGGGTGTTGTAGGCCTCGATGATCGAGGCCACCTGCTGCTCGTCCAGGCGCCCGAGCATTTCTTCGGACAGTGACAG  >  NC_002947/3483952‑3484100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.