New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1642089 =	10 (0.520)	3 (0.160)	3/250	NT	20.9%	coding (126/393 nt)	PP_1442	hypothetical protein
	?	NC_002947	1642134 =	13 (0.690)					coding (81/393 nt)	PP_1442	hypothetical protein

TCGATAGGCCCGAGCTGCCGACGATACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAG  >  NC_002947/1641941‑1642196                                                                                                                                                     |                                                                                                            gcacaggcagcacaaatttcctcgatcatcgggtatcctcaggccatcgccagccttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCt                                                                                                            >  1:314654‑M1/149‑150 (MQ=255)    aTAGGCCCGAGCTGCCGACGATACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGc                                                                                                         <  1:42992/150‑1 (MQ=255)                    gacgaTACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCtt                                                                                         >  2:57520/1‑150 (MQ=255)                            cGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCAtt                                                                                 >  1:331952/1‑150 (MQ=255)                             ggggtCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTc                                                                                >  1:446600/4‑150 (MQ=255)                                 tCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTgg                                                                                                          <  1:422176/120‑1 (MQ=255)                                 tCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTgg                                                                                                          >  2:422176/1‑120 (MQ=255)                                  cTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCttt                                                                           <  2:331952/150‑1 (MQ=255)                                   ttCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTc                                                                          >  1:424780/1‑150 (MQ=255)                                            ccatcgccagccttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAg                                                                 >  1:141733‑M1/106‑150 (MQ=255)                                                        ttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTc                                                                    >  1:354409‑M1/94‑135 (MQ=255)                                                        ttcggagccaccatgacctctcctcgtctgctcgttcccctgagcttcgccctgctttctgcttgcgcgcaacaatcctcgcagcccgttgacCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTc                                                                    <  2:354409‑M1/42‑1 (MQ=255)                                                           gCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGa                                                  <  1:57520/150‑1 (MQ=255)                                                              aaGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCTACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGa                                               <  2:424780/150‑1 (MQ=255)                                                                                                        gcGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAAc     <  2:446600/150‑1 (MQ=255)                                                                                                         cGGTAGTCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCTTTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACg    >  1:488803/1‑150 (MQ=255)                                                                                                           gTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAg  <  2:230349/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                            TCGATAGGCCCGAGCTGCCGACGATACCGGTGTCTTCAGGCGCGCTGTAAACCTCGGGGCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAG  >  NC_002947/1641941‑1642196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.