New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1642089 =	10 (0.520)	3 (0.160)	3/250	NT	20.9%	coding (126/393 nt)	PP_1442	hypothetical protein
	?	NC_002947	1642134 =	13 (0.690)					coding (81/393 nt)	PP_1442	hypothetical protein

GCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGC  >  NC_002947/1641999‑1642281                                                                                                                                        |                                                                                                                                                    gCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGa                                                                                                                                       <  1:57520/150‑1 (MQ=255)    aaGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCTACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGa                                                                                                                                    <  2:424780/150‑1 (MQ=255)                                              gcGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAAc                                                                                          <  2:446600/150‑1 (MQ=255)                                               cGGTAGTCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCTTTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACg                                                                                         >  1:488803/1‑150 (MQ=255)                                                 gTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAg                                                                                       <  2:230349/150‑1 (MQ=255)                                                                                           ctggacgccgaaagcgaatgccccaagcgcctgcaggtcggccagGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATgg                                             >  1:141733‑M2/46‑150 (MQ=255)                                                                                              gacgccgaaagcgaatgccccaagcgcctgcaggtcggccagGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGaa                                                         >  1:354409‑M2/43‑135 (MQ=255)                                                                                              gacgccgaaagcgaatgccccaagcgcctgcaggtcggccagGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGaa                                                         <  2:354409‑M2/93‑1 (MQ=255)                                                                                                cGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGa                                        >  1:22559/1‑150 (MQ=255)                                                                                                    cTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCAtggtg                                                                 >  2:116274/1‑121 (MQ=255)                                                                                                    cTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCAtggtg                                                                 <  1:116274/121‑1 (MQ=255)                                                                                                    cTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGAt                                    >  1:352449/1‑150 (MQ=255)                                                                                                            gcTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCgatg                            >  1:249988/1‑150 (MQ=255)                                                                                                                      ttCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGaaa                  >  1:88571/1‑150 (MQ=255)                                                                                                                            ttCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTtgtg            <  2:352449/150‑1 (MQ=255)                                                                                                                            ttCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGCTTAGTTTGACGCTGAAGGCTGGCGATGGCCTGAGGATACCCGATGGTCGAGGAAATTtgtg            <  2:488803/150‑1 (MQ=255)                                                                                                                                      agGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGc  >  1:314654‑M2/3‑150 (MQ=255)                                                                                                                                        gTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACga                                                                                >  1:469188/1‑70 (MQ=255)                                                                                                                                        gTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACga                                                                                <  2:469188/70‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                    GCCAAGGCTTTGCAATACGTTGGGCGCCGGGTTCTGTACCAGCCAGCGGTAGCCGGTGGTGGGGTTGCTGGGCAGGGTAAGCGTGAGGATCTGGCCGACCTGCAGGCGCTTGGGGCATTCGCTTTCGGCGTCCAGGTCAACGGGCTGCGAGGATTGTTGCGCGCAAGCAGAAAGCAGGGCGAAGCTCAGGGGAACGAGCAGACGAGGAGAGGTCATGGTGGCTCCGAAGGCTGGCGATGGCCTGAGGATACCCGATGATCGAGGAAATTTGTGCTGCCTGTGC  >  NC_002947/1641999‑1642281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.