| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1746298 | 8 (0.410) | 3 (0.160) | 3/248 | NT | 23.4% | coding (210/387 nt) | PP_1544 | hypothetical protein |
| ? | NC_002947 | = 1746325 | 12 (0.650) | coding (183/387 nt) | PP_1544 | hypothetical protein | |||||
GGGTTGATCACTTCGCACCCTGGGTCTCGCTTAAGCTCTGCCATGCTGGCCGCTTCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGATCTCCGCAGCCATGGCAGCCTTGATCCCTTCCGGCATGTTGAAGAAAACCTTCTCGATCCCCAGTTTCGCGGCTG > NC_002947/1746164‑1746443 | gggTTGATCACTTCGCACCCTGGGTCTCGCTTAAGCTCTGCCATGCTGGCCGCTTCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCAt < 1:421673/150‑1 (MQ=255) cTGGGTCTCGCTTAAGCTCTGCCATGCTGGCCGCTTCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGAcctggcgctgtcatggatcgcgcaggatcctgaa < 1:442311‑M1/150‑35 (MQ=255) tGGGTCTCGCTTAAGCTCTGCCATGCTGGCCGCTTCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCa < 2:257489/150‑1 (MQ=255) ttCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGAcctggcgctgtcatggatcgcgcaggatcc < 1:384796‑M1/112‑31 (MQ=255) ttCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGAcctggcgctgtcatggatcgcgcaggatcc > 2:384796‑M1/1‑82 (MQ=255) ttCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTc > 2:450816/1‑150 (MQ=255) cTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGAtctc < 1:249322/150‑1 (MQ=255) aCGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGATCTCCGc > 2:368790/1‑150 (MQ=255) tGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGATCTCCGCAGCCATGGCAGCCTTGATcc > 2:296524/1‑150 (MQ=255) tCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGATCTCCGCAGCCATGGCAGCCTTGATCCCTTCCGGCATGTTGAAGAAAAc < 1:296524/150‑1 (MQ=255) ttCAGGATCCTGCGCGATCCATGACAGCGCCAGGtcctgaagagcgggcgcgtcgccttgaacgacctgacgcgccagctttttacatatcgccaaaactagcgcgtgagttcgaagcggccagcatggcagagcttaagcgagacccag < 1:442311‑M2/150‑117 (MQ=255) ttCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGATCTCCGCAGCCATGGCAGCCTTGATCCCTTCCGGCATGTTGAAGAAAACCTTCTCGATCCCCAGTTTCGCGGc > 1:54839/1‑150 (MQ=255) cAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGATCTCCGCAGCCATGGCAGCCTTGATCCCTTCCGGCATGTTGAAGAAAACCTTCTCGATCCCCAGTTTCGCGGCTg > 2:378522/1‑150 (MQ=255) ggATCCTGCGCGATCCATGACAGCGCCAGGtcctgaagagcgggcgcgtcgccttgaacgacctgacgcgccagctttttacatatcgccaaaactagcgcgtgagttcgaa < 1:384796‑M2/112‑83 (MQ=255) ggATCCTGCGCGATCCATGACAGCGCCAGGtcctgaagagcgggcgcgtcgccttgaacgacctgacgcgccagctttttacatatcgccaaaactagcgcgtgagttcgaa > 2:384796‑M2/1‑30 (MQ=255) | GGGTTGATCACTTCGCACCCTGGGTCTCGCTTAAGCTCTGCCATGCTGGCCGCTTCGAACTCACGCGCTAGTTTTGGCGATATGTAAAAAGCTGGCGCGTCAGGTCGTTCAAGGCGACGCGCCCGCTCTTCAGGATCCTGCGCGATCCATGACAGCGCCAGGTCCTGCCAGAGTTCCTGCACCTGGTCGTAGCCGTGCCGCTCGATCTCCGCAGCCATGGCAGCCTTGATCCCTTCCGGCATGTTGAAGAAAACCTTCTCGATCCCCAGTTTCGCGGCTG > NC_002947/1746164‑1746443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |