New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5205221	20 (1.030)	5 (0.270)	5/250	NT	23.1%	intergenic (+64/+51)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein
	?	NC_002947	= 5205267	14 (0.750)					intergenic (+110/+5)	PP_4585/PP_4586	TrmH family RNA methyltransferase/hypothetical protein

AAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTGGGCAGGCGCATCAGCCCACGCACTACATC  >  NC_002947/5205119‑5205388                                                                                                                                                     |                                                                                                                          aaaGGGCTGAATACCCGCTCAGTGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCATGCAAGGCTTTTCATACGg                                                                                                                          >  2:346520‑M2/1‑149 (MQ=255)        tGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAGGGTCAGGCAAGGCTTTTCATACGGGCCTTAg                                                                                                                   >  2:308202/1‑150 (MQ=255)         gAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCATGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGt                                                                                                                  <  1:209985/150‑1 (MQ=255)             aCCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCaa                                                                                                              <  1:296497/150‑1 (MQ=255)                 gCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACAcc                                                                                                          <  2:354761/150‑1 (MQ=255)                       ggCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGctc                                                                                                    >  2:64761/1‑150 (MQ=255)                            aaGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTgcag                                                                                               <  2:141137/150‑1 (MQ=255)                                      aaCAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGaa                                                                                     <  2:254847/150‑1 (MQ=255)                                       aCAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAAc                                                                                    <  1:64761/150‑1 (MQ=255)                                                    gcgAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCAc                                                                       >  1:39636/1‑150 (MQ=255)                                                               gCTGTTAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGa                                                            <  1:180509/150‑1 (MQ=255)                                                                cTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGAt                                                           >  1:378010/1‑150 (MQ=255)                                                                                cAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCg                                           <  2:377686/150‑1 (MQ=255)                                                                                    cgcCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGggcccaaggcatccctggcgcctgtcccg                                                                                              <  2:153122‑M2/95‑30 (MQ=255)                                                                                    cgcCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGggcccaaggcatccctggcgcctgtcccg                                                                                              >  1:153122‑M2/1‑66 (MQ=255)                                                                                            aTGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTg                               <  2:378010/150‑1 (MQ=255)                                                                                                       cTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGggcccaaggcatccctggcgcctgtcccggcctttgacagcccaagcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagcccttt                    <  2:38118‑M2/150‑104 (MQ=255)                                                                                                                aaGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACAggcccaaggcatccctggcgcctgtcccggcctttgacagcccaagcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcg           <  1:457333‑M2/150‑113 (MQ=255)                                                                                                                         gaCGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTGGGCAGGCGCATCAGCCCACGCACTACATc  >  1:425529/1‑150 (MQ=255)                                                                                                                         gaCGAAGGTCAGGCAAGGCTTTTCATACAggcccaaggcatccctggcgcctgtcccggcctttgacagcccaagcttcgccgcacggccttgttatttgaacttgggccctgagcgggtattcagccctttggccatgcggtcatacaa  >  2:457333‑M2/1‑29 (MQ=255)                                                                                                                                             tttCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAAc                                                                                    <  2:260523/48‑1 (MQ=255)                                                                                                                                             tttCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAAc                                                                                    >  1:260523/1‑48 (MQ=255)                                                                                                                                                     |                                                                                                                          AAAGGGCTGAATACCCGCTCAGGGCCCAAGTTCAAATAACAAGGCCGTGCGGCGAAGCTTGGGCTGTCAAAGGCCGGGACAGGCGCCAGGGATGCCTTGGGCCTGTATGAAAAGCCTTGAGACGAAGGTCAGGCAAGGCTTTTCATACGGGCCTTAGTGCAACACCTTGCTCTGCAGCACATCCGAACGCCGCCCCAGCACGTTCTCGCTGATCTGCACGAAGTCCTCGGTACTGACGCTGGGCAGGCGCATCAGCCCACGCACTACATC  >  NC_002947/5205119‑5205388

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.