New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5692618	20 (1.030)	8 (0.450)	5/236	NT	27.0%	intergenic (+31/‑139)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein
	?	NC_002947	= 5692680	25 (1.420)					intergenic (+93/‑77)	PP_4994/PP_4995	hypothetical protein/exopolysaccharide biosynthesis protein

GATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCC  >  NC_002947/5692536‑5692824                                                                                                                                                 |                                                                                                                                                 ggtcaaccgGACCTAACGCATTGCCGGGGGAGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgccc                                                                                                                                             >  2:473611‑M2/3‑145 (MQ=255)       ccGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaag                                                                                                                                       >  1:409080‑M2/1‑139 (MQ=255)             cTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGACGCCTGTGGAGTATCGGCGGGAGCGGGCCTGCCCGCGAAGGGGGTg                                                                                                                                 >  2:395146/1‑150 (MQ=255)             cTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTg                                                                                                                                 <  2:46676/150‑1 (MQ=255)             cTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTg                                                                                                                                 <  1:112595/150‑1 (MQ=255)                         ccGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGaca                                                                                                                     >  1:14332/1‑150 (MQ=255)                             ggggACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACaaa                                                                                                                 <  1:35385/150‑1 (MQ=255)                              gggACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAg                                                                                                                <  1:222156/150‑1 (MQ=255)                                                     ttttCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCAcc                                                                                         >  1:292460/1‑150 (MQ=255)                                                                  ccGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCGGAAGCCTGTGGAGTATCGGCGGGAGCCGGCATGCCCGGGAAGGGGCTGGCAAAAGCGAAACAAAGCCCACCTTGTCGGTCTCGCCACCTGGCGCCACACtc                                                                            >  2:230491/1‑149 (MQ=255)                                                                          tgcgcgGGCCCGCCCGCTCCCACGGGTTGCTCACCGGCGTTGAAGCCTGTGGAGTAGCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCAt                                                                    <  1:395146/148‑1 (MQ=255)                                                                                 gCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaaggggctggcacatgcagaaaatcagttactggacaaac                                                                                                  >  1:195219‑M2/1‑65 (MQ=255)                                                                                 gCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaaggggctggcacatgcagaaaatcagttactggacaaac                                                                                                  <  2:195219‑M2/113‑49 (MQ=255)                                                                                  cACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaaggggctggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctcc                                                            <  1:321886‑M2/150‑87 (MQ=255)                                                                                   aCGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctcca                                                           <  1:67978‑M2/150‑88 (MQ=255)                                                                                   aCGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCt                                                           <  2:345240/150‑1 (MQ=255)                                                                                    cGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTc                                                          <  2:14332/150‑1 (MQ=255)                                                                                     gCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                                                                                                                       <  1:208054/88‑1 (MQ=255)                                                                                     gCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGa                                                                                                                       >  2:208054/1‑88 (MQ=255)                                                                                     gCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCg                                                         >  1:295489/1‑150 (MQ=255)                                                                                       ccGCTCTCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgat                                                                >  2:343844‑M2/1‑59 (MQ=255)                                                                                       ccGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgat                                                                <  1:343844‑M2/141‑83 (MQ=255)                                                                                          cTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCAtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctccagccggtc                                                    >  2:67978‑M2/1‑56 (MQ=255)                                                                                             ccACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGAcaca                                                                                                                   <  2:90622/84‑1 (MQ=255)                                                                                             ccACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGAcaca                                                                                                                   >  1:90622/1‑84 (MQ=255)                                                                                               aCGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTa                                               >  2:410075/1‑150 (MQ=255)                                                                                                cGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCGtgcccgcgaagaggccggcacatgcagaaaatcagttactggacaaacggtccccacgggcaaagcgccaggtgcggatgatctccagccggtcgaactc                                              <  2:397945‑M2/150‑101 (MQ=255)                                                                                                          aCCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCt                                                                                                         <  1:89875/81‑1 (MQ=255)                                                                                                          aCCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCt                                                                                                         >  2:89875/1‑81 (MQ=255)                                                                                                                     aGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAAGCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATc                         <  1:398780/150‑1 (MQ=255)                                                                                                                           tgGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCg                                                         <  2:332119/112‑1 (MQ=255)                                                                                                                           tgGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCg                                                         >  1:332119/1‑112 (MQ=255)                                                                                                                            ggAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTgg                                                                                                                                <  2:411734/40‑1 (MQ=255)                                                                                                                            ggAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTgg                                                                                                                                >  1:411734/1‑40 (MQ=255)                                                                                                                                            cGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATcc  <  2:292460/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                 GATCATCCGCACCTGGCGCTTTGCCCGTGGGGACCGTTTGTCCAGTAACTGATTTTCTGCATGTGCCGGCCTCTTCGCGGGCACGCCCGCTCCCACGGGTTGCTCACCGGCGCTGAAGCCTGTGGAGTATCGGCGGGAGCGGGCATGCCCGCGAAGGGGCTGGCAAAAGCGACACAAAGCCCACCTTGTCAGTCTCGCCACCTGGCGCCACACTATCCCCCATGAAAACCCTCGCACCCAGCTACCTCAAGCACCAGTTCCTGATCGCCATGCCGCACATGGCCGATCC  >  NC_002947/5692536‑5692824

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.