| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5734097 | 58 (1.400) | 13 (0.340) | 13/246 | 2.0 | 21.3% | intergenic (‑67/+90) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase |
| ? | NC_002947 | = 5734152 | 43 (1.140) | intergenic (‑122/+35) | proY/hutH | proline (histidine) APC transporter/histidine ammonia‑lyase | |||||
GTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5733938‑5734097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttcgcgggcGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGC < NC_002947/5734152‑5734004 GTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTGAAGCTTGTTGCATGTCACGTCGTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCC > 2:315332/1‑150 GAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGC‑GCAGCAGCCCCct < 2:12099/150‑3 GGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGG < 1:758669/150‑1 GCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGCGACCTTGAGCTTGTTGCATGTCACGTACTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGG > 1:406210/1‑150 CATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCT < 2:863757/116‑1 CATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCT > 1:863757/1‑116 TGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAA > 2:978079/1‑150 TGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAAGGGGCTGC‑GCAGCAGCCCCctgaa < 2:826847/107‑6 TGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAAGGGGCTGC‑GCAGCAGCCCCctgaa > 1:826847/1‑102 GGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCCGCTGG‑GC‑GGCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCT < 1:609982/150‑1 CTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAG > 1:894286/1‑150 GCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCC < 1:978079/150‑1 TGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGC < 2:894286/150‑1 ACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGG > 1:858833/1‑116 ACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGG < 2:858833/116‑1 GTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGA > 1:379166/1‑109 GTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGA < 2:379166/109‑1 TTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCC > 1:869708/1‑117 TTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCC < 2:869708/117‑1 AATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACCCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGG < 2:470073/100‑1 AATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGCACACCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGG > 1:470073/1‑100 CCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCTGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAG < 2:292225/150‑1 CCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAG < 2:531878/150‑1 CCCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAG < 2:647331/150‑1 CCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGA > 2:361788/1‑107 CCTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGA < 1:361788/107‑1 CTTCGCGGGTGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAG < 2:813880/142‑1 CTTCGCGGGTGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAG > 1:813880/1‑142 CTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGT > 1:135107/1‑150 CTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGT > 1:689439/1‑150 CTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGAC > 2:458918/1‑107 CTTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGAC < 1:458918/107‑1 TTCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTC < 1:511046/150‑1 TCGCGGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCT < 2:127678/150‑1 GGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAA > 1:900167/1‑132 GGGCGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAA < 2:900167/132‑1 CGCGCCCGCTCCCACAGAAGTAGGGGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGC < 2:135107/150‑1 GTAGAAAAGGCCGGTGCCGATGGCGGAGCCGAGGGCCATGAAACGGATGTGGCGGGCACTTAGCCCGCGCTTGAGACCTTGAGCTTGTTGCATGTCACGTCCTTGAATTGTTTTTGTGGTCGTGAGATTCAGGGGGCTGCTGC‑GCAGCCCCTTCGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5733938‑5734097‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttcgcgggcGCGCCCGCTCCCACAGAAGTAGGTGCAAAACACCATCCCCTGTGGGAGCGGGCGTGCCCGCGAAGGGGCTGCGCAGCAGCCCCCTGAATCTCACGACCACAAAAACAATTCAAGGACGTGACATGCAACAAGCTCAAGGTCTCAAGCGC < NC_002947/5734152‑5734004 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |